barSeed - Barley Seed Development Database

Probe CUST_937_PI390587928

Source Contig U35_6337

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_937_PI390587928	Hv_44K_v2	TGTTACTCCCTTTGTAGTGATCTAAACGCTTTTATATTTCTTTATGGAGGGAGTACTAGG	757	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16969.1	4240	2e-23	4167 - 4224	100	58 / 58	plus	ABC16263
JLOC1	JLOC1_11716.2	4016	1e-23	3935 - 3992	100	58 / 58	plus
JLOC1	JLOC1_11716.1	4111	1e-23	4030 - 4087	100	58 / 58	plus
Harvest35	U35_6337	820	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (820 bp)

>U35_6337 820 Hv_44K_v2
GCCTGTTGTTCAGTTAGTTTCTGTTACTAGAACAAGTGCAAGGCTTCGTAATGTACAACC
AGAAGTTGCTCTGTCACGAAGTTATGAGGTGCTAAAGCGACACAAGAAAAGCACCGAAAA
CGATCATGGCACCGCTGCCAAAGAATCAACAGCAAGAGATGAAAGGTCTCCTGGTGATGT
AGATCTGTCAAAGCCAACTTCCCCAGAGGAGGCTCCAAAAGGATCACACCCAAATGGCCC
TTCGAAAAAAGCTGACAAAGCGCCAGCTGAATCACCCCCAATACTACCTGGTTCTCCTCC
CGACCCAATGGAGACTGACAATGGCGAAGACTCTGCCATGCCTACCAGCGATGACACGCT
TGAACAGCTGGAGGGCGTGAAGCAGCGCTTCATGGAGCTGACCGTGGGCTACGGGGTGCC
GCAGCTCGAGAGGCTTTACTCGCGGATAATGAGAGGCGCGATAGAGTTGACAGGTAAAGA
AACCAACAAGGATCATAGACGGTTAGTTGTTAGGCATTTGTTGGCATTTGTTGAGAACAG
CGACAATTTTTAACTCTAGCAGGAACAAGAGATTTTACTGGTTTTCCCTGTGTACATTCT
GTTGTCTGTTGGAACAACAACCCTGAGGAGCTGTCCATGCCTCCTGATGTAGTGGTGTAA
CAACATTTTCTGAAATGCTCAGTGGCATTACAACAGTTTTGCATAGCTAGTTCTGTTGCC
GTCTTCTGAGGATTTGACTTTCAGCACCGCCTTTGTTTGTTACTCCCTTTGTAGTGATCT
AAACGCTTTTATATTTCTTTATGGAGGGAGTACTAGGAAA

Homology of Contig U35_6337 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33980.1	1199	2e-65	protein\|bromodomain protein 103, putative, expressed
Brachypodium v1_2	Bradi4g35150.1	1196	1e-74
Arabidopsis v10	None