barSeed - Barley Seed Development Database

Probe CUST_9378_PI390587928

Source Contig U35_18333

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9378_PI390587928	Hv_44K_v2	AGCATTTCGAATTGTGTACCGAAAATCAATGGACCAGGGATTGACGAAGGGCTAACTAAA	1191	GeneList: paleturquoise MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.643	5.690	1.307	0.763	0.253	0.321
Raw	743.806	597.200	118.304	117.854	12.238	17.996

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5375.1	1331	2e-24	9 - 68	100	60 / 60	minus	ABC03831 ABC11029
MLOC	MLOC_5375.2	1334	2e-24	9 - 68	100	60 / 60	minus	ABC03831 ABC11029
JLOC1	JLOC1_3456.2	1356	8e-25	1254 - 1313	100	60 / 60	plus
JLOC1	JLOC1_3456.1	1331	8e-25	1229 - 1288	100	60 / 60	plus
Harvest21	ABC11029	1263	3e-25	1192 - 1251	100	60 / 60	plus	ABC11029
Harvest35	U35_18333	1265	3e-25	1192 - 1251	100	60 / 60	plus

Contig Sequence (1265 bp)

>U35_18333 1265 Hv_44K_v2
GGGCTGCAGGAATCCGGCACGAGGCATTCCTCTTTTCCTCTCTGGATCTCTCCCTCCAGC
CTGCTAGCTAGCTCACAGAGGGACGTAGAGAGATCCTCCTTCCGTAGCATCCATGATGAG
CATGATGGCCGATTTGAGCTGCGGAGCTTCCGGTGTGACCGTGAATGATCATCAGCTGAC
GGCTCCGGCTCCGGAGGAGTCGGCGGTGGCGGGGAGCGAGAAGATGGGGAGGGGCCGGAT
CGAGATCAAGCGCATCGAGAACACCACCAACCGGCAGGTCACCTTCTGCAAGCGCCGCAA
CGGCCTCCTCAAGAAGGCGTACGAGCTCTCGGTGCTCTGTGACGCCGAGGTCGCCCTCGT
CGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACTCAAACAACAGTGTGAAAGCCACCAT
TGAGAGGTACAAAAAGGCCAACAGTGACACATCCAACTCTGGCACGGTTGCAGAAGTCAA
TGCCCAGTACTACCAGCAGGAGTCCTCCAAGCTGCGCCAGCAGATCAGTAGCTTGCAAAA
CTCAAACAGTAGGTCACTGGTGAGAGATTCTGTCAGCACCATGACCCTGAGGGATCTTAA
GCAGCTTGAAGGCAGGCTGGAGAAAGGCATAGCCAAGATAAGAGCTAGAAAGAATGAGCT
GATGTATGCTGAAGTTGAGTATATGCAGAAGAGGGAAATGGAGCTACATAACGATAACAT
TTACCTGAGGAGCAAGGTGTCTGAGAATGAGAGGGGTCAGCAGCCGATGAACATGATGGC
GTCGGGGTCGACGAGCAGCGAATACGATCACATGGTCGCGCCGTATGATTCCAGAAACTT
CCTGCAGGTTAACATGCAGCAGCAGCAGCATTACTCCCAACAGCTGCAGCCAACTGCCCT
TCAGCTCGGCCAGCAGTACTTCAACTAGTTTTGCTCCACACGCTGCAGTCCACGCACGCT
AGATAATACTGTCGCGTGCATGTGTGCTTGCAATGTCGTTGCTCGTTCTACGGTGGTATA
ACAGTAGTAACCGGAATTTGTGGATCAGATGCATGTGGTACTCGTAATATATATGTATGT
ATTTGCTCATGAGCAACTAGCTAGGTGCTGCTAGTCGATCACCACACAAGTGGTCGATTT
CGGCGTGCACCATCGCGTTGCATATCTTCCCCAATGTATTAATTAATTACCAGCATTTCG
AATTGTGTACCGAAAATCAATGGACCAGGGATTGACGAAGGGCTAACTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_18333 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10504.3	277	2e-128	protein\|OsMADS3 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi2g06330.1	270	1e-141
Arabidopsis v10	AT4G18960.1	252	4e-93	\| Symbols: AG \| K-box region and MADS-box transcription factor family protein \| chr4:10383917-10388272 FORWARD LENGTH=252