barSeed - Barley Seed Development Database

Probe CUST_9377_PI390587928

Source Contig U35_18334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9377_PI390587928	Hv_44K_v2	GGTCATTGTGAATCGCCCCTTTTAGTTAGTTTACTTATTAAAGATTTGTGATCTGTCCAA	855	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23760.1	1790	2e-24	1021 - 1080	100	60 / 60	plus	ABC08937
JLOC1	JLOC1_16394.1	1140	8e-25	971 - 1030	100	60 / 60	plus
Harvest21	ABC08937	959	3e-25	856 - 915	100	60 / 60	plus	ABC08937
Harvest35	U35_18334	959	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (959 bp)

>U35_18334 959 Hv_44K_v2
TATCACAGGGCTTAAGGCTTTAGAGAGCACACACGTACACAGTAGAGCAGAGAGCTTACG
AGCGGCGAAGAGCAAGAGATCGACCGAAGACGATGGCCGGTGAAGGAGATGATGTCAAGC
TACTAGGTTCGGTGATGAGCCCGTTCGCGGTCCGCGTGCGCATGGCGCTGCACGCCAAGG
GCGTCAGCTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGCGACCTCCTCCTCGCCT
CCAACCCGGTGCACAACAAGGTTCCCGTGCTCATCCACGCCGGCAGGCCCGTCTGCGAGT
CGCTTGCCATCGTCGAGTACGTCAACGAGGTCTGGGCCGACGGCGCCTCCCTCCTCCCTG
CCGACCCCTACGGCCGCGCTGTCGCCCGCTTCTGGGCCGCCTACGTCGACGACAAGCTGT
TCCCCGCGTGGTTAGGCATCCTGCGCGCCGCCACGGAGGAGGACAGAGCGGAGAAGCTCG
ACGCCGCGCTCGCGGTGATCGGGCTCATGGAGGACGCCCTCGCCCAGTGCTCTGATGGGA
AGGACTTCTTTGCCGGCGACTCCGTCGGGTACCTCGACCTTGCGCTCGGGTGCAACCTGT
TCTGGTTCAAGGCGCTGCGCGAGATGTTCGGCGTGACGCTCATCGACGCCGGAAGGACTC
CGGGCCTGGCCGCCTGGGCTGAGAGGTTCGAGCAGACGGAGGCCGGAAAGGAGGTGGCCC
CGCCCATGAAGAGTATGGTGGAGCATGCCCGGAAGCTGCGGGCTATGGCAGGTAATAATT
AAGTGGCAAGCTTGGAGGAGTTTCTTCTTGATTCGGTCGACCTCGAGTTGGATTTTGTTT
GTTCAGTATAAAGGTGGTCATTGTGAATCGCCCCTTTTAGTTAGTTTACTTATTAAAGAT
TTGTGATCTGTCCAATATGCAATAAAATGGTCATTTATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38710.1	234	2e-99	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi2g42260.1	243	2e-106
Arabidopsis v10	AT1G10370.1	227	5e-64	\| Symbols: GST30, ATGSTU17, GST30B, ERD9 \| Glutathione S-transferase family protein \| chr1:3397274-3398273 REVERSE LENGTH=227