barSeed - Barley Seed Development Database

Probe CUST_9375_PI390587928

Source Contig U35_18336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9375_PI390587928	Hv_44K_v2	GTTTCCCATTGCTGAATAGCTAGATTCCTATTGTTACTTCTCGTAAAATTTTTCTCGCAA	1373	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.132	2.058	1.121	0.663	0.333	0.298
Raw	212.772	324.467	154.076	147.453	25.221	24.781

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10606	1448	3e-25	1374 - 1433	100	60 / 60	plus	ABC10606
Harvest35	U35_18336	1448	3e-25	1374 - 1433	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_18336 1448 Hv_44K_v2
AGCGCACGACCAGATCCCGAGCGCGACGGCGGGTTCCTAGCCAGCCGCCACTAGTGCCGG
CCCTCCGCCGGGGCGCGCCCAGCCGGCCAAAGCCTCCGCTGCCCCGCCCCGATACAGGAT
CCCCAGCAGTGCCTCCCTCCGTCGAGCAGCCGCTCCCACAAGCAGCGCCTCCCTCCCCGG
AGCAGCCGCTCTCGCCCAGCAACTCCGCCGCCCGGAGCAACTCCGGCGACCATTCCATAG
GCAGCAACTGCTTCGGCGCCCTCTCTTCTCCGATGGAGCGGCCAGAGTGGAGCCTCTCTG
ACTTCGAGATCGGCAAGTGCATCGGCGAGGGCAAGTTCGGCAAGGTCTATATCGCCCGCG
AGAAGCAGAGCGGCTATGTGGTGGCGCTCAAGGTGACATACAAGGAGAAGCTGCAGAAGT
ACCGGTTCCACGCGCACCTGCGGCGGGAAATCGAGATCCAGCATGGCCTCGACCATCCCA
ACGTGCTCCGCCTCTTCGCCTGGTTCCACGACGCCGAGAGAGTCATCCTTGTGCTCGAGT
ACGCCGCCCGTGGAGAGCTCTACAAGGTCCTCCGCAGTGTCGGGCACTTCTCGGAGCGGA
CCGCCGCCACCTATGTAGCAAGCCTTTCTGGTGCACTGGCATACTGTCACAAGAAGCAGG
TAATTCACAGGGACATCAAGCCGGAAAATCTGCTCCTTGATATCGAGGGCCGACTTAAAA
TTGCAGACTTTGGATGGGCGGTTCGGTCAAATGCTAAACGTCACACACTCTGTGGCACAA
TAGATTACCTGGCACCAGAGATGGTAGAGAAAAAGGCTCATGATTACGCTGTTGACAACT
GGACTATAGGAATCCTGTGCTATGAGTTTTTGTATGGCTCACCACCCTTTGAAGCTGAAG
AACAGCAAGATACTCTGATGAGGATAGTCAAAGTGGACTTGCTGTTCCCTAAAACTCATG
ACATATCTGCAGATGCCAAGGATCTTATTTGCAAGCTGCTAGTGAAGGATTCAAGAAAGA
GGATTTCTCTCGATGATATTTTGAAGCATCCATGGATTGTAAAGAATGCAGAACCTTCAG
GGAGTTGCATTGAGCAAAAAGCTAGTGCCTAAGCTCCATGGGAATCCACGGTATTTCTCG
CTGGTGGGAGCCGGCCTGGAAATTGACGAAGCACTTCTTTTTGCAAAATTTGGCAAAGTA
CTTGTCTGCCAATATGCAAAACATAGAAGTCAACAGTTAGCATGATCTGTACTAGCTTGG
CCTTTCTCCAGAGAGATTCTTTCGACCTACTACTAATGCCCGCTTGGGGGTGAATCTGTG
TTCTGGAATCTGGAATACTATTTTCAGTGTATGCCTGTAACTTCAGAGCTCTCGTTTCCC
ATTGCTGAATAGCTAGATTCCTATTGTTACTTCTCGTAAAATTTTTCTCGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_18336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55620.2	280	0.0	protein\|CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g07590.1	280	0.0
Arabidopsis v10	AT2G45490.1	288	1e-135	\| Symbols: AtAUR3, AUR3 \| ataurora3 \| chr2:18747658-18749044 REVERSE LENGTH=288