barSeed - Barley Seed Development Database

Probe CUST_9374_PI390587928

Source Contig U35_18337

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9374_PI390587928	Hv_44K_v2	AACATGCCAAACATGCAAGTAAACAGTTAGCATCATCTGTACTACTACCTCTGTAAACTA	973	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248418.1	1236	2e-24	994 - 1053	100	60 / 60	plus	ABC10606 ABC10607 ABC43453
MLOC	MLOC_18742.1	656	2e-24	252 - 311	100	60 / 60	minus	ABC10607 ABC43453
JLOC1	JLOC1_12981.1	619	8e-25	246 - 305	100	60 / 60	minus
Harvest21	ABC10607	1036	3e-25	974 - 1033	100	60 / 60	plus	ABC10607
Harvest35	U35_18337	1036	3e-25	974 - 1033	100	60 / 60	plus

Contig Sequence (1036 bp)

>U35_18337 1036 Hv_44K_v2
GGCTCGATTTCGAAATTCTATCGTCTCTCCGCCGGCAACCACCAGCGTCTCCGTCCTCCG
ATGGAGCGGCCGGGGTGGAGCCTCTCCGACTTCCAAATCGGCAAGTTCATCGGCGAGGGC
AAGTTTGGCAAGGTCTATCTCGCCCGCGAGAAGCAGAGCGGCTACGTGGTGGCGCTCAAG
GTGATATACAAGACGAAGCTGCAGAAGTACCGGTTCCACGCGCACCTGCGGCGGGAGATC
GAGATCCAGCACGGCCTCGACCACCCCAACGTGCTCCGCCTCTTCGCCTGGTTCCACGAC
GACCAGCGGGTCGTCCTCGTCCTCGAGTACGCCGCCCGTGGAGAGCTCTACAAGCTCCTC
CGCAGCGTCGGCCACTTCTCGGAGCGGACCGCCGCCACCTATGTAGCAAGCCTTGCTGGT
GCACTGGCATATTGTCACAAGAAGCAGGTAATTCACAGGGACATCAAGCCGGAAAATTTG
CTCCTTGATATCGAGGGCCGACTTAAAATTGCAGATTTTGGATGGGCGGTTCGATCAAAT
GCTAAACGTCACACACTTTGTGGCACAATAGATTACCTGGCACCAGAGATGGTCGAGAAA
AAGGCTCATGATTACGCTGTTGACAACTGGACTTTAGGAATCCTGTGCTACGAGTTTTTG
TATGGATCACCACCCTTTGAAGCTGAAGAACAGCAAGATACCCTGATGAGGATAGTCAAA
GTGGACTTGCTGTTTCCTAAAACTCGTGTCATATCTGCAGATGCCAAGGATCTCATTTGC
AAGCTGCTAGTGAAGGATTCAAGCAAGAGGATTTCTATGGACGATATTTTGAAGCATCCA
TGGATTGTTAAGAATGCAGAACCTTCAGGGAGTTGCATTGAGCAAAAATCTATTGCCTAA
GCTCCTTAGGAAGTCCATGGTATTTGCTGCCGTTGCGAGCCGGACCGCATTTTGGGCGAA
GTGCTTGTTTGCCAACATGCCAAACATGCAAGTAAACAGTTAGCATCATCTGTACTACTA
CCTCTGTAAACTAATT

Homology of Contig U35_18337 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55620.2	280	2e-170	protein\|CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g07590.1	280	2e-177
Arabidopsis v10	AT2G45490.1	288	5e-128	\| Symbols: AtAUR3, AUR3 \| ataurora3 \| chr2:18747658-18749044 REVERSE LENGTH=288