barSeed - Barley Seed Development Database

Probe CUST_9372_PI390587928

Source Contig U35_18338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9372_PI390587928	Hv_44K_v2	GTAGTATGATTTGTGCCTTCTGAGGCACTCCCTTTGTAATGAAATATAAGATGTTTTGAG	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15947.1	1663	7e-23	43 - 102	98	59 / 60	minus	ABC09414 ABC09415
MLOC	MLOC_15947.2	1715	7e-23	43 - 102	98	59 / 60	minus	ABC09414 ABC09415
JLOC1	JLOC1_10963.2	1813	4e-23	1615 - 1674	98	59 / 60	plus
JLOC1	JLOC1_10963.1	1760	4e-23	1562 - 1621	98	59 / 60	plus
Harvest21	ABC09414	642	3e-25	19 - 78	100	60 / 60	minus	ABC09414
Harvest35	U35_18338	642	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_18338 642 Hv_44K_v2
GAGTTTCACCTGCAGTGTGTTGACAAGTGGCTTAAAGAAATACNCAGGTAAGGAGAGAAA
AAAATAGGCCCTTCTTTTGATGCAGAAGGGCAATTTGGATCGCCGATAACACGGGACCAT
TTCGCTAGCTATCTCCTAAGGTTTTGTGGCTGCTGCAGGGTTTGCCCGTTGTGCCGCGGG
GACGTCTGCGAAGGTGGCAGCAGCTCTTGAAGGCCTTGGCACCAGCTCACCTCCTCAAGT
TGCTGCTTGAAGACGGTAGCACCACCGTTACGCCTCTTGCGGCCACGGACGATGCTGTTT
GGTTGGTCAGGCATTAGCTGACCCTGTCATCTGGAGAGGGCTGATTACCCATTGCTGAAC
CATGCGATTCCATGCATTGATCAAGTTCCCAGAATATAACAAAGACTTGTACATATCTTT
TGTAGCCTTATCCCATGTATGGCATCATGTACATATATGCGAAAATTCGATCCGATTTCG
CCATATTCCAGATCCATATGTATCCCCCCTTGACAATGATGAATCCATGCTAATCTCTCC
ATTCTGAGGATACATGTTTCCAGTGTAGTATGATTTGTGCCTTCTGAGGCACTCCCTTTG
TAATGAAATATAAGATGTTTTGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None