barSeed - Barley Seed Development Database

Probe CUST_9371_PI390587928

Source Contig U35_18339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9371_PI390587928	Hv_44K_v2	ACCATGTAAGAGCTACAAAAAGCTTGAGACAGCCCAATGCAGTGCTGATATGGAACAGTG	479	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.405	0.686	1.714	1.981	0.962	0.786
Raw	32.512	90.374	190.013	355.628	59.126	53.326

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369613	3288	2e-24	2121 - 2180	100	60 / 60	plus	ABC09414 ABC09415
MLOC	MLOC_15947.3	1241	2e-24	143 - 202	100	60 / 60	minus	ABC09415
MLOC	MLOC_15947.2	1715	2e-24	617 - 676	100	60 / 60	minus	ABC09414 ABC09415
JLOC1	JLOC1_10963.2	1813	8e-25	1041 - 1100	100	60 / 60	plus
Harvest21	ABC09415	960	3e-25	480 - 539	100	60 / 60	plus	ABC09415
Harvest35	U35_18339	988	3e-25	480 - 539	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_18339 988 Hv_44K_v2
GGGTGAAACAAGAAGAAATATAGAAGGGTCCTATGGGATTCATTTTCAAGACGTGGTTCT
AGAGGTTATCTAGATTCAGACACTGATGATCTTGGATTTTACAGTAGATGGCTAGACCTT
GGTGATGATCTTTTTGGGGATGAGGTTGAGGAGGCACGCTACTTCCATCGTAGACGCCAT
GGTTCAATCAGAGTAAACCAGTATTCAAGATCTCGGATTAGGGAGCACCGTCGTGCTATT
TTTGATAGTGGGAACGGGCAAAGTACTGCTGCTTGTCCTTTGGGGATACACCAAATTGGC
AGATGCACCTGTGATGCATTCTTGGTCGCTGAAGAATCTAGTGCTCGTGCAAGTATATCA
AGAATTGTCATGTTAACAGAGGCATTATTTGAGGTATTGGATGAGATTCATCGGCAACCC
TCGTCACTTTCACTTTCCATGGCCTCTGCTCAAGCTCCAGAGTCTGTGGTTAATTCATTA
CCATGTAAGAGCTACAAAAAGCTTGAGACAGCCCAATGCAGTGCTGATATGGAACAGTGC
CATATCTGCTTAACTGAATACGAGGATGGAGATCAGATAAGAAGTCTTCCGTGCAAACAC
GAGTTTCACCTGCAGTGTGTTGACAAGTGGCTTAAAGAAATACACAGGGTTTGCCCGTTG
TGCCGCGGGGACGTCTGCGAAGGTGGCAGCAGCTCTTGAAGGCCTTGGCACCAGCTCACC
TCCTCAAGTTGCTGCTTGAAGACGGTAGCACCACCGTTACGCCTCTTGCGGCCACGGACG
ATGCTGTTTGGTTGGTCAGGCATTAGCTGACCCTGTCATCTGGAGAGGGCTGATTACCCA
TTGCTGAACCATGCGATTCCGTGCATTGATCAAGTTCCCAGAATATAACAAAGACTTGTA
CATATCTTTTGTAGCCTTATCCCATGTATGGCATCATGTACATATATGCGAAAATTCGAT
CCGATTTCGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55520.1	524	6e-123	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g54247.2	519	2e-134
Arabidopsis v10	None