barSeed - Barley Seed Development Database

Probe CUST_936_PI390587928

Source Contig U35_6338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_936_PI390587928	Hv_44K_v2	GTTTCTCTGCACTTCTTGTAAAGAGCCAAGGAAGTGTATATAAGATTATGAGTACTAGTA	869	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.060	2.781	1.372	0.652	0.272	0.383
Raw	98.973	148.519	60.468	47.903	5.697	9.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251964.1	1548	7e-23	1487 - 1543	100	57 / 57	plus	ABC14278
JLOC1	JLOC1_33056.3	2134	4e-23	1814 - 1873	98	59 / 60	plus
JLOC1	JLOC1_33056.2	1862	4e-23	1542 - 1601	98	59 / 60	plus
JLOC1	JLOC1_33056.1	1611	4e-23	1291 - 1350	98	59 / 60	plus
Harvest21	ABC14278	944	1e-23	870 - 929	98	59 / 60	plus	ABC14278
Harvest35	U35_6338	945	3e-25	870 - 929	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_6338 945 Hv_44K_v2
CGCTTATCTCCTTCACGGCATTCGAATACAATGCGACAATCGACTTCTACTGGTCGCCGC
TGATACTAGAATCCAACAGCGACAACCCGATAATTCACCGGGTTGAGTACCGGATCATAC
GGGCGGAGAAGATTGAGAAGCATGCCCGTGCCTGGGGCAATGCTGACGTTATTGTTTTCA
ACTCTTACCTTTGGTGGAGGAAGCAGAAGCCCGATATGAAGATGAAGGTCATGTACGGCT
CATTTGAGGATGGTGATGCAAAGCTAGACGAAGTGGAGATGGTGGAAGGTTTCGAGATTG
CTCTCAAGAAACTAACCGAGTGGGTGGGAGCGAATGTCAACAACAAGACTAAAATCTATT
TCGCAGGCTCGTCGCCTACCCATACCTGGGCAAGCGACTGGGGTGGAGACGACAGCAACA
AGTGCCTGAACGAGTCCGAGCCGATCCAGAAGGTGGGGTACAAAGGCGCGACCACGGACT
ACAGCATGATGGACAAGGCGAAGCACATCTTCAGACCACTGGAGCAGAAAGGCATAAGCG
TTCAGATACTCAACTTCACCCAGCTGACCGACTACCGCATCGACGCGCACCCCACCGTGT
TCCGGCGGCAGTTCACCCCCCTCACGGCGGAGCAGATCGCCAACCCGAGCAGCTACGCCG
ACTGCACGCATTGGTGCCTCCCCGGCGTCCCGGACGTGTGGAACCACTTCCTCTACTCGT
ATCTCGTGCAGAAATCATGATGTAAATATACATATGCATGCCATTTCTTGTTCGTTCGGG
GTCTTGTTTTCCCGGTTGTGGGAGGGTCTAGATTAGGCCGCTGCTGCCTTAATGTATAGG
ACATGCCCCGCGTCAAAAAAAGAGAGAAGGTTTCTCTGCACTTCTTGTAAAGAGCCAAGG
AAGTGTATATAAGATTATGAGTACTAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01570.1	504	3e-143	protein\|PMR5, putative, expressed
Brachypodium v1_2	Bradi4g44860.1	495	5e-162
Arabidopsis v10	AT2G38320.1	410	7e-84	\| Symbols: TBL34 \| TRICHOME BIREFRINGENCE-LIKE 34 \| chr2:16055488-16057874 FORWARD LENGTH=410