- Probe CUST_9363_PI390587928
- Source Contig U35_20652
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9363_PI390587928 | Hv_44K_v2 | CTGGAAGCTTTGTCTACTCTGATATGGTTGCATTATCATATATTCATATTCCTTTTCCCA | 766 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.445 | 1.530 | 1.163 | 0.856 | 0.271 | 0.387 |
| Raw | 256.091 | 436.970 | 286.319 | 341.382 | 36.697 | 56.955 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21047.5 | 2370 | 7e-23 | 2259 - 2318 | 98 | 59 / 60 | plus | ABC14523 |
| MLOC | MLOC_21047.3 | 2188 | 7e-23 | 2128 - 2187 | 98 | 59 / 60 | plus | ABC14523 |
| MLOC | MLOC_21047.1 | 2161 | 7e-23 | 2050 - 2109 | 98 | 59 / 60 | plus | ABC14523 |
| MLOC | MLOC_21047.2 | 2170 | 7e-23 | 2059 - 2118 | 98 | 59 / 60 | plus | ABC14523 |
| MLOC | MLOC_21047.4 | 2179 | 7e-23 | 2119 - 2178 | 98 | 59 / 60 | plus | ABC14523 |
| JLOC1 | JLOC1_14602.3 | 2140 | 4e-23 | 1974 - 2033 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_14602.2 | 2044 | 4e-23 | 1878 - 1937 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_14602.1 | 2232 | 4e-23 | 2066 - 2125 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC14523 | 842 | 3e-25 | 17 - 76 | 100 | 60 / 60 | minus | ABC14523 |
| Harvest35 | U35_20652 | 842 | 3e-25 | 767 - 826 | 100 | 60 / 60 | plus |
Contig Sequence (842 bp)
>U35_20652 842 Hv_44K_v2 ATTGGTAGCTTGCCAAACAGCAATTCTGCAAGTNTTATGGAGCAGACAGAAATGCTCACT GGAAACGTCCTTGGTGAGAATATGCAATTGTGTAAATGAGCTGATTTGAACTGACCTTCC ACTAAACAGGTTTAGCTTCCTGTGCATTCCATGTTCAAATTATCATTCTATTCTCGTTAC GATACAACTTTTGCTCATTTTTACTATTTCTGTTTTGTTTAATTATTTTTGTCTTCAAAA CCGAGTGGTTTGATTGAAGTGATATCTAAAAGATTATGCAGGTGCCAAATTGGTTGTATC CAGAAGCCAGAAAGCTTCAATTAGGCCTGTGTCCTAAACTGCGTGAGTGGAGGATAGTCA AAAGGGAAAAAAGTGCTGACTTGCTGAATGGGATCAGGGGTTTCATGCCTGTGGTCGGTA AGTCTGTTTGCTCCATTTCTGACATGGATTTTCTCAGAAGGGGGTCTTGAAAGAGAAGGT GCTTCTGGTGCCGGAATGCTCAATCAGCTATATGGAGCAAATGTGCAGCAGTTTGTCTCA GATGCTTATGACAAGGAGAAGCTGTTACCCAAAACTGTGAACCATGTACCATTCGGGTTA CTTGATCTTATTAGCATAATAATACAAAGTTTTCAGCTTGTAAGTGGTAGACACAGATGC TCTACCTTATACATTAATTACATAGGTTCTGGTCAGAGTTAGGTAGCTTACTACAGTTCT CTTATCAAATTTTGTCATAGAGAAGACTGCACATAATTTTCAAATGCTGGAAGCTTTGTC TACTCTGATATGGTTGCATTATCATATATTCATATTCCTTTTCCCAAAAAAAAAAAAAAA AA
Homology of Contig U35_20652 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |