barSeed - Barley Seed Development Database

Probe CUST_935_PI390587928

Source Contig U35_6339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_935_PI390587928	Hv_44K_v2	GCGGTGTTTGTGTTGTTGTCCTGTAATTTGGCATGCTTTTATCTTAGTGTGTGATTAATT	1205	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.958	1.389	1.489	1.070	0.346	0.336
Raw	2274.857	5089.420	4716.973	5406.863	612.731	643.931

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376811	2549	2e-24	2485 - 2544	100	60 / 60	plus	ABC19186
MLOC	MLOC_73534.1	3697	9e-22	1 - 55	100	55 / 55	minus	ABC19186
JLOC1	JLOC1_48961.3	2353	8e-25	2278 - 2337	100	60 / 60	plus
JLOC1	JLOC1_48961.2	2374	8e-25	2299 - 2358	100	60 / 60	plus
JLOC1	JLOC1_48961.1	2668	8e-25	2593 - 2652	100	60 / 60	plus
Harvest21	ABC19186	427	3e-25	335 - 394	100	60 / 60	plus	ABC19186
Harvest35	U35_6339	1292	3e-25	1206 - 1265	100	60 / 60	plus

Contig Sequence (1292 bp)

>U35_6339 1292 Hv_44K_v2
GGAGAGAACTAGTTTTCTTCGAGGGTTCTTCATATAACTTTGACCTGGAAGATTTGCTTA
GAGCTTCAGCTGAAGTACTTGGAAAGGGAAGCTTTGGAACTACCTACAAGGCTGTTCTTG
AGGACAGCACCACAGTTGTGGTCAAGAGATTAAAGGAGATGGTGGTGGGGAAGAAAGACT
TCGAACAGCAGATGGAGATAGTTGGCAGGATTGGCCAGCATCAGAATATTGTTCCGTTGC
GTGCTTATTATTACTCCAAAGATGAAAAGCTACTGGTGTATGACTATGTCCCTGCTGGTA
GCCTTGCTGCTGTTTTGCATGGGAACAAAGCTACTGGAAGAGCTGCACTGGACTGGGAAA
CGAGAGTGAAGATATCCCTCGGCGTGGCGCGAGGGCTCGCCCATCTTCACGCCGAGGGAA
GCGGGAAGTTCATCCACGGCAACCTGAAGTCGTCGAACATCCTTCTGTCGCAGAACCTCG
ACGGCTGCGTCTCCGAGTTCGGCCTGGCGCAGCTCATGACCACCCTGCCTGCCCCCGCCC
GGCTCATCGGATACCGAGCGCCGGAGGTCCTGGAGACCAAGAAGCCGACCCAGAAGTCGG
ACGTCTACAGCTTTGGCGTCCTGCTCCTGGAAATGCTGACTGGAAAGGCACCCCTGAGGT
CCCCCGGGCGTGAGGATTCCATCGAGCACCTGCCGCGGTGGGTGCAGTCCGTTGTCCGGG
AGGAGTTGACCGCGGAGGTGTTCGACGTGGACCTGCTCCGGCACCCCAACATCGAGGACG
AGATGGTGCAGCTGCTCCAGGTGGCCATGGCGTGCGTGGCCGTCGCGCCGGACCAGCGGC
CGAGGATGGACGAGGTGATCAGGCGAATCGCCGAGATCCGAAACTCGGACTCCGGGCCAG
CGACGCCGCCGGAGGAGGCCGCAGCCCAGGCGCCGTGAGGGCGGGTCGCGGAGATGAAGG
AGTCCCGTTGTGTTTAGCAGAGGTAGCTAGCTAGCTAAGCTAGGTTGCTGCATAGTTACT
TGGTTGGTTATATAGATAGCTTTGAGCGAAAGTTGATAGCCGCTTGCTTGGTTGATTAGT
GGGGTGAGGTTTCTGTTGATCTCTGATTTATTCTTTTTGTTTTGAGAAATTCTGCTGTGC
CGTTTTCGGAGTAGTGAGGCTACTGATCCTGAATGAGTATCTGATGGGCTCTGCTGGTGT
TCAGAGCGGTGTTTGTGTTGTTGTCCTGTAATTTGGCATGCTTTTATCTTAGTGTGTGAT
TAATTCTTTCAGTCTTAAAAAAAAAAAAAAAA

Homology of Contig U35_6339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g60330.1	638	0.0	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	Bradi2g53420.1	634	0.0
Arabidopsis v10	AT5G58300.1	654	5e-139	Leucine-rich repeat protein kinase family protein \| chr5:23572821-23574871 FORWARD LENGTH=654