- Probe CUST_9356_PI390587928
- Source Contig U35_20659
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9356_PI390587928 | Hv_44K_v2 | CACGAGGACGCCCGTCTTTTGATGATGAATGAGAAATCCTTTTCGCAGAGGTCTAAAAAA | 512 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.108 | 2.506 | 1.580 | 0.854 | 0.280 | 0.292 |
| Raw | 517.066 | 1826.276 | 980.863 | 830.088 | 96.790 | 108.293 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74653.1 | 2582 | 3e-21 | 47 - 100 | 100 | 54 / 54 | minus | ABC20303 |
| JLOC1 | JLOC1_49770.1 | 2582 | 2e-21 | 2483 - 2536 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC20303 | 583 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC20303 |
| Harvest35 | U35_20659 | 582 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus |
Contig Sequence (582 bp)
>U35_20659 582 Hv_44K_v2 GCGGGACCTCCACCATGACCGGAGCAGATCTGAACCTGCCGTCAATTACCATAGCGGTGC TCAACCAGTCGAGAACAATAACGCGAACAGTCACCAACATTGCGAGCGACGAGAACTACA CTGTCAGTTGCAACGCCCCCTACGGAGTGGCGGTGTCCACGGCTCCCGCTCAGTTCTTCA TCCCCAGCGGGCAGAAGCAGCTCGTGACATTCATCGTGAATGCCACCATGAGTAACTCTT CTGCGAGCTTCGGGGACGTCGAGTTCTATGGGGACAGGGGGCACCGGGTGGTCATCCCAT TTACGGTCATGTCCAAGGCTGTGTAGAGTTCCTGATAACTGAAAAGCTGACGCCGGAACG GTGACCTGACTGATCTGGAGGTAGAATGACCAGGATTTACCTAGTTGTGTTTGTTTGGTG TACATTTTTGAAGCATGTCGTCCATGTAAGTAGATGAGTTACTGTTTACCTAGTTGTTTT GTTTGGCGAGCAGTAACTGTAAAGGGAATGTGCACGAGGACGCCCGTCTTTTGATGATGA ATGAGAAATCCTTTTCGCAGAGGTCTAAAAAAAAAAAAAAAA
Homology of Contig U35_20659 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g51130.1 | 857 | 6e-54 | |
| Arabidopsis v10 | None |