barSeed - Barley Seed Development Database

Probe CUST_9351_PI390587928

Source Contig U35_18344

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9351_PI390587928	Hv_44K_v2	GAGGCGCGAAACCACTTCTTGAAATGTTTAGTCAATGAAAAATATAACGTCAGTTTTTTC	1471	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.560	2.169	1.409	0.681	0.367	0.284
Raw	38.592	86.140	47.900	37.080	5.909	4.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55501.1	491	2e-24	143 - 202	100	60 / 60	plus	None
Harvest21	ABC51214	509	3e-25	449 - 508	100	60 / 60	plus
Harvest35	U35_18344	1532	3e-25	1472 - 1531	100	60 / 60	plus

Contig Sequence (1532 bp)

>U35_18344 1532 Hv_44K_v2
GCCCACCCCAATCCAATTCGGACTCACACCCCAATCCAGTTCGGACTCGATGCTCTAGCA
ATTTATTTATTGGCCCGACTCGATCGATCTCTTCATAGGAGTATTTCGTTTTATCCAATC
TGAAGAGTTGCAGATCCGTAGATTTGCAAATCTAAGCGATTTCTCCTGCGGAGCGCAAGT
TCGATCCACGAATTTGCAATTTCAGGACTTATGGCTCTCTCCAACGAGGAGGTGGTGGAG
GTGGAGGTGGAGGTGGGAGTGGGGCTGGAGCTGGAGGTGGAGCAGGAGGAGGAAGACGAT
GACGTCCCCCTAGGCCCTGAGGATGTGCTGAGATTTGTTGAGAGTGTTGGTTCCGTGGAA
CCTGCCAAGTGGAAATTGCTGATGAGAGATAATATGGGGGTTCCGCCCGAGCCCTATGAC
TGGCCCAACATCTGCCCGCTCCCTGGGTCGTCTAGAGATCACAGGTTGGCGTGCGATCTT
TACTGGCACCAGGCCTACCAGCTGAATCAAGTCTCTGAGACTTGCCTGCCTCCTATGCGG
TATACTCGATGTTGCAGTGTAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCACGC
CCTATACTTCAACTCTTTTCTACCATGGTGCATACCTTTCTGAAAGATTGCACCAGATCA
GTCGAGGTATACGGTTATATTGCGGTCCGAGATGGCGAGGATTATCGCCGCAATTATCTT
TTCAACCGATCCCGAGATGACCCGCTTACTATCAATTCGGCCAGCGACTATCTGCGCTTG
TTGAGCCCCAAAAGAGGCATCTCGATGAAATTTGATTGCCTAGTTGAAGTGGATATTAGG
ACAAAGGCATCGCCGGGTGATACAGATGATAAAAATCTTGTTGATGGATGCTTCGACTTA
ATCGAGCGCCGGTCTCGTTTCGACGTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGT
GCTCTTGTTTTTAATCTTATCATATTTCGAGACAGTGTCGAGGCAACCATACATATGAAC
TTTTTGGAAGTGCCTGGAGATGGCTTTGATATAAAGATGTGTGGGTATACTGCCATTTGG
AAGAACATGTATGCCTTCATAGACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTCG
GCTGGGAGTTTTTCACAATATTTTGTAGCAGCTGTGCAGATGGAGGACACACTGTTTATT
GATTTTATGGAGGGGAGTATGCCAATTTCATTTAAAGCGGATATTCATGGCAGTGAAGAA
AAAGAATATCATTTCTGTAATAGTGCTGTGGTGTCTGTGAAAGTGTCTTGGTCGACAGTC
CTCTACTAAGGAATATATGTATGTTGGAGGTTAATTCAATAATATTTTCAGAGGAAGAGA
ACAAAAAGTGCTGTGATTTCTATGTTTTATTTTGGTTTTTCTTCAACTTCTTATGCAAGT
AGTAACCAGTTTCGTTTCCCACTAAGAACTGGAGGCGCGAAACCACTTCTTGAAATGTTT
AGTCAATGAAAAATATAACGTCAGTTTTTTCT

Homology of Contig U35_18344 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g00990.1	324	2e-138
Arabidopsis v10	None