barSeed - Barley Seed Development Database

Probe CUST_9337_PI390587928

Source Contig U35_20662

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9337_PI390587928	Hv_44K_v2	TGCTTGTAACATGAATGGTGCGTTCATTTGTTGACACGCTGTACCCAACTCAGCTTGAAG	1539	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.450	1.776	1.255	0.723	0.242	0.271
Raw	4042.673	7839.127	4750.073	4326.053	508.277	615.799

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376117	2567	2e-24	2440 - 2499	100	60 / 60	plus	ABC15642
MLOC	MLOC_62075.2	872	2e-24	789 - 848	100	60 / 60	plus	ABC15642
JLOC1	JLOC1_40604.1	992	8e-25	693 - 752	100	60 / 60	plus
Harvest21	ABC15642	1635	3e-25	1540 - 1599	100	60 / 60	plus	ABC15642
Harvest35	U35_20662	1685	3e-25	1540 - 1599	100	60 / 60	plus

Contig Sequence (1685 bp)

>U35_20662 1685 Hv_44K_v2
GAAATATTTACCACCACAATTGAGTTTGACTTCAGCACGATCTCTAGTCGCATCCGGGAA
CTTGCATTTTTAAATCCTGAGCTGACAATAACACTGACTAAGGAAGAACAGGATGCACAG
GTTCAACACAATGAATACTGTTATGCTGGTGGCCTGGTTGAATATGTTGCCTGGTTGAAT
ACTGACAAGAAACCCCTCCATGACCCAATAGCATTCAGAAAGGAATTGGATGGAATAATT
GTTGATGTCTCCCTGCAATGGTGCTCTGATTCGTACTCTGATACAGTGCTGGGATATGCC
AACAGTATCCGTACTATTGATGGTGGTACTCATATTGAGGGGCTGAAAACTTCCCTGACA
AGAACAATTAATAACTTTGCAAAGAAGTCGAAGATTATGAAGGATAAAGATATTAGCTTG
AGTGGGGAGCATGTAAGAGAAGGAATGACGTGCATTATTTCAGTGAAGGTCCCTAATCCA
GAGTTTGAAGGGCAGACAAAGACCAGGCTGGGAAATCCAGAAGTGCGAAGAATAGTTGAA
CAATCTGTTCAAGAAAATCTAACTGAATACTTGGAGTTACATCCAGATGTTTTAGATTCA
ATTCTGTCCAAGTCCCTTAATGCTCTCAAGGCTGCATTGGCAGCCAAGCGGGCTAGAGAG
TTAGTGAGGACAAAGAGTGTCTTGAAATCTTCTTCACTTCCTGGGAAACTTGCTGACTGT
GCATCTTCTAACCCTGCAGAATGTGAAATCTTCATAGTTGAAGGTGATTCGGCTGGGGGT
AGTGCAAAGCAAGGCCGGGATAGGAAATTTCAGGCTATTTTGCCTCTGAGAGGCAAAATT
CTCAACATTGAGAGGAGGGATGAAGCAGCCATGTACAAAAATGAAGAGATCCAAAATCTT
ATTCTTGGTCTTGGATTAGGAGTGAAGGGTGAGGATTTTAAGAAGGAAGCTCTTCGGTAT
CATAAGATAGTTATACTGACAGATGCTGATGTAGATGGTGCACATATCCGGACTCTTCTC
CTCACTTTCTTCTTTAGATATCAGAGAGCACTTTTCGATGAAGGTTGCATCTATGTTGGT
GTGCCTCCTCTTTACAAGGTTGAGCGTGGGAAACAAGTGCACTACTGCTATGATGAGGCT
GATCTTAAAGATCTAGTCAACACCTTTCCTACAAATGCTTCTTATAATACCCAGAGGTTC
AAAGGTTTGGGCGAGATGATGCCCTTGCAATTATGGGAAACGACAATGGATCCTGAAAGG
AGGCTGTTGAAGCAGCTAACGGTCGAAGATGCTGTAGAGGCCAATGTTGTGTTTTCATCT
CTTATGGGTGCTCGGGTTGAATACAGGAAGGAACTAATACAGAAGGCCGCAAGCATTGTC
AACCTAGATCACCTTGACATCTGAGAGCGTTAAACAAGGTTGACCATTGTGTATGATATA
GAAGACCACAACTTGCCACCCATTCGACACAGATCAAGTTGTTTTGGTGCTAGTTTAGTA
TCACTCTAGCTAGAATGGAGAAACGGGTCGATCCCCTGGTGCTTGTAACATGAATGGTGC
GTTCATTTGTTGACACGCTGTACCCAACTCAGCTTGAAGCGGGGGTTAAACCGCAATATC
ACGGGAAGTGGTCAAGTTGCTCAGGCAGATGGCAACTCATCAAATCCCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_20662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g16290.1	730	protein\|DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g10040.1	724
Arabidopsis v10	AT5G04130.1	732	\| Symbols: GYRB2 \| DNA GYRASE B2 \| chr5:1122084-1128031 REVERSE LENGTH=732