barSeed - Barley Seed Development Database

Probe CUST_9331_PI390587928

Source Contig U35_20668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9331_PI390587928	Hv_44K_v2	GGACATCCCCTTCCATTGTAACACCTTTCGTTTTTACAGTTGAACCTATATAAAAATTTC	1184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355400	2215	2e-24	2140 - 2199	100	60 / 60	plus	ABC12341 ABC13869
MLOC	MLOC_65179.1	861	2e-24	786 - 845	100	60 / 60	plus	ABC13869
JLOC1	JLOC1_42874.1	747	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC13869	1266	3e-25	1185 - 1244	100	60 / 60	plus	ABC13869
Harvest35	U35_20668	1266	3e-25	1185 - 1244	100	60 / 60	plus

Contig Sequence (1266 bp)

>U35_20668 1266 Hv_44K_v2
GCTTTGATCCGAGCCGTAAGCAACCGATGACAAGCAGGGTTGTGACACTATGGTACCGAC
CACCAGAGCTGCTTTTGGGCGCAACCGATTATGGGGTGGGCGTGGACCTATGGAGCGCGG
GATGTATACTCGCCGAGTTGTTGGCTGGGAGGCCTATTATGCCAGGCCGAACCGAGGTGG
AACAGCTGCACAAAATTTTTAAGCTGTGTGGCTCCCCCACAGAAGAATATTGGAAAAAGT
CGAAGTTGCCTCATGCAACGATATTTAAGCCTCAGCAGCCATACAAAAGACGAATAAAAG
ATACATTCAAAGATTTTCCACAATCAGCATTGCGGTTGATTGAAACACTACTTGCAATTG
ATCCAGCTGATCGTTTGACAGCGTCCTCCGCATTAAGAAGTGATTTCTTTACCACTGAAC
CTTATGCATGCGAACCATCGAGTCTCCCAAAATATCCCCCAAGCAAAGAAATGGATGCAA
AGCGCAGAGATGAAGAAGCCAGACGTTCAAGAGCTGCTGGTGGTAGACCTAATGGAGATG
GAGCTAGCAAGGCAAGGACACGCGACCGGCCTAGGGGAGCTCCAGCTCCAGAGGCAAATG
CCGAGCTTCAAGTAAATATTGATAAAAGGAGGATAGTAAGTCATGCAAATGCAAAAAGTA
AGAGCGAAAAGTTTCCTCCCCCGCATCAGGATGGTGCAGTTGGTTTCCCTTTGGGTTCTT
CAAATCAAATGGACCCACTATATGAACCCCCAAACCCGACTTCCTTCAGCACTGTGTTTG
CTCATGAGAAAAGCTCCGTGCCTACTTGGTCTGGGCCATTGGTCAATTCTTCCGCAGTTG
GGAACCAAAAGCGGAAACACAAGTCCAGCCGCTCATCAAAACAACCGTCCACTGCCCGTG
CTCGGTAAGTTGCTGAGAGGTGGTACTTGTAGAGAAAACGAGGGTCCACTCCGTGGTGTT
GCCTACACAATGTTTGGCAAACAAGGCATGTGATGATAAATTAATTTGTTGCTTCATCAA
TTATTTTGGTGCACTTATTTTCTGGGGGAACTTCATTGTATAGTCTGGGGAAGGAACTCA
AGTAGTTACTTGTGTACATTAGGTTCTCCTTTTTTCTGTTCTTATAAGCAGGTGCATTTG
ATGTTAGATTCATTTGAGTGGAAGCTTAGATCTCTAGCAGTTCAGGACATCCCCTTCCAT
TGTAACACCTTTCGTTTTTACAGTTGAACCTATATAAAAATTTCTCATCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_20668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22700.1	404	5e-166	protein\|cyclin-dependent kinase C-2, putative, expressed
Brachypodium v1_2	Bradi1g62440.1	563	0.0
Arabidopsis v10	AT1G54610.2	573	2e-120	Protein kinase superfamily protein \| chr1:20393962-20396902 REVERSE LENGTH=573