barSeed - Barley Seed Development Database

Probe CUST_932_PI390587928

Source Contig U35_6342

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_932_PI390587928	Hv_44K_v2	AAACAATGAGTTGCAGTACTGTAACGAGGTGGCTTCGGAGCTGAAATCAATAGGTATCCG	654	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.860	1.133	1.365	1.415	0.409	0.923
Raw	20.208	40.251	43.250	71.151	6.904	17.238

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55849.1	4440	7e-23	1821 - 1880	98	59 / 60	plus	ABC13621 ABC22285
JLOC1	JLOC1_36064.1	2686	4e-23	1883 - 1942	98	59 / 60	plus
Harvest21	ABC22285	1062	3e-25	349 - 408	100	60 / 60	minus	ABC22285
Harvest35	U35_6342	1062	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (1062 bp)

>U35_6342 1062 Hv_44K_v2
CGGGNCTGCAGGCAATTCTGCACGAGGTATACAATGANAAAGCTACAATCATACAGGGCA
TTTACCCATCAGAGTGGCAGAGCTTGGAACTGTCTACAGATATGAGCTCTCTGGTGCTCT
GCATGGGCTGTTCCGCGTAAGAGGGTTTACACAGGATGATGCCCACATATTTTGTCTCGA
GGACCAGATAAAAGATGAAATTAGAGGAGTTCTTGATTTAACTGAAGAAATACTGGGGCA
GTTTGGCTTCCGGAATTATGAGGTAAACCTTTCAACCAGGCCAGAAAAATCTGTTGGCAG
TGACGACATATGGGAAAAGGCAACAATTGCTCTGAAAGACGCGCTGGATGATAAAGGTTG
GGGGTACACGATTGATGAAGGGGGAGGTGCTTTCTATGGTCCGAAAATTGATTTGAAAAT
TGAGGATGCTCTTGGAAGAAAATGGCAATGTTCCACTGTGCAGGTTGACTTCAATTTGCC
TGAACGGTTTGACATCACTTATGTTGACTCGCATACTGAGAAGAAACGACCTATCATGAT
TCATAGAGCCATCCTTGGGTCTTTGGAGCGTTTTTTTGGCATCCTCATTGAAAACTATGC
TGGTGATTTTCCACTTTGGCTTGCTCCAACCCAAGCCCGTATTCTACCTGTCACAAACAA
TGAGTTGCAGTACTGTAACGAGGTGGCTTCGGAGCTGAAATCAATAGGTATCCGCGCCGA
GGTATGCCACGGCGAGCGTCTGCCGAAGTTAATCAGAAACGCCGAAACACAAAAGGTGCC
GCTGATGGCTGTCGTTGGCCCCAAGGAAGTCGAGGCCAGGACGCTCACCATCAGGTCCAG
GCATAACGGGGAGATGGGCACCATGCCCGTCGACAATTTCATCAGCAAAATCCAATCGGC
CGTCGCTGACAAATCCTCGCTGTAGATACCCCGGTCTGTTAAAACTTCAGTTCATATTGT
AGAGCACCAGATCTTCTGCTGCACATACACCGCCGGAGCGGAGCGCTTCCGACGAAACCG
AGCATGAGGTCCAGCAATTTTGTGCACAAAAGCCATCACCAC

Homology of Contig U35_6342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33500.1	675	0.0	protein\|threonyl-tRNA synthetase, putative, expressed
Brachypodium v1_2	Bradi3g53530.1	664	0.0
Arabidopsis v10	AT2G04842.1	650	6e-171	\| Symbols: EMB2761 \| threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative \| chr2:1698466-1701271 REVERSE LENGTH=650