barSeed - Barley Seed Development Database

Probe CUST_9321_PI390587928

Source Contig U35_19047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9321_PI390587928	Hv_44K_v2	GCGGATGTTTATTAGGTGATCTACAACTAGCTTTTATTACATTAGTAGCTGTACACCATA	1459	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248260.1	3002	2e-24	2910 - 2969	100	60 / 60	plus	ABC10039
MLOC	MLOC_55241.2	1904	2e-24	1802 - 1861	100	60 / 60	plus	ABC10039
JLOC1	JLOC1_35618.1	2100	8e-25	1805 - 1864	100	60 / 60	plus
Harvest21	ABC10039	1570	3e-25	52 - 111	100	60 / 60	minus	ABC10039
Harvest35	U35_19047	1570	3e-25	1460 - 1519	100	60 / 60	plus

Contig Sequence (1570 bp)

>U35_19047 1570 Hv_44K_v2
GCTCAATGATGCTGCTCAGCTACTTAAACAAGGCATACCCGAATCAAGGCTCCAGCGTAC
AAAATGCTGATGGATCTCTGCATAAGCCAAGATCAAAGTCTCCTCTTCCCAGCGTAGTGC
CTTCTGATACTTTCAGGGAAGCGAGGGCCAGCAGTCAGAGGTTCACAAGTCCTCCCCCGA
AGCGTGTGGGGTCTGATAAAAGCGTCTATGGCAAATCGTTGGGCAGGGAACAGTGTGATA
TGGCTGCAAGCCCTGATTGGTGCTCGACTCCGGTGGTCTTTGGTGAGCACAGTTCTCAGA
AGGATAGTTCATGGACCAGAAGATACTTTGACAANTGTGGGAAGGAGGAGGGTTAGTGCA
GTAGAGAATGTGAGGAGCCGTACGGTTAGCATGGCTCAAGCGGTACAATCGACAGTTGAT
TGGAAACTTGATAAAGCCAAGCTACTTGTTGGCCATAGTTTTGCTTCTGGGGCACATAGC
CGGCTATACAGAGGACTTTACGATGATAAACCGGTTGCCATTAAATTTATCCGTCGGCCT
CACGAGGACCCTGGTGGGATAATGGCTGCAAAGCTTGACAAACAATATAACACTGAGATC
AATGCATTGTCTCATCTGTACCATAAGAATGTGATCAAGCTTGTAGCAACTCATAAATGT
GGACCAGTTTATTACATTATTACAGAGCTTCTTCCTGGAGGTTCCTTGAGGTCATACCTG
CACAACCCAGAGCACCGGCCCCTCCCTCTGGAGAGGACCATATCCATCGCTCTTGAGATT
GCCCGCGGGTTGGAGTACGTCCACTCTCAGGGAGTTGTCCACCGCGACATTAAGCCCGAG
AACATCCTTTTTGATGAGAATTTCGAGGTGAAGATTGCTGATTTTGGCATTGCCTGCGAG
GAGACGCTATGTGATCTGCTACTGGAGGATGAGGGCACGTACCGCTGGATGGCCCCTGAG
ATGATAAAGCGCAAGCCATATAACCGAAAGGTGGATGTGTATAGCTTTGGACTGCTGCTG
TGGGAGATGGTGACCGGAAGAATTCCTTTCGAGAACCTATCCCCAGTCCAGGTGGCTTAT
GCCGTTGCGACTGACAAATTGAAACCGATGGACCCTCAAGATTACTGCCCAGCAGCAGTG
AGACCCCTGATCGAGCAGTGCTGCGCGTTGCAGCCCGAGAAGAGGCCAGATTTCTGGCAG
CTTGTGAAAACCCTGGAGAAAATCCAGTCTGTTATGTCGCAGGGTGGCTCTCTTGACACT
CTGAGGAGCAGTGGCCACAAGAAGGGGCTCAAGCACTGGATTCAGAAACTGAAGCCATCA
CACGGCGCGTGAGCTCAGTCATCATCTAGCATCGTTTCGACCGTTATTTTATCCGGTTGG
ATATGCTCCCTTAGTCTAGCCTAGCGTAAGATGATAAGCTTTTCGATTCGATTTTATGTT
TGAAAATTCTAGGATGGATGCGGATGTTTATTAGGTGATCTACAACTAGCTTTTATTACA
TTAGTAGCTGTACACCATATTATCAAACTTATATGAGTTATCTCTTTCGTTCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_19047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10450.1	564	5e-179	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi2g06260.1	562	0.0
Arabidopsis v10	AT5G58950.1	525	3e-110	Protein kinase superfamily protein \| chr5:23801136-23803025 REVERSE LENGTH=525