barSeed - Barley Seed Development Database

Probe CUST_931_PI390587928

Source Contig U35_6343

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_931_PI390587928	Hv_44K_v2	GTTGTTGTTGTTGGTAGAAATGATAGAAAGCCTTTTAGGTAGCTGCTGTTGCTGGTAGAA	812	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8867.1	1145	2e-24	903 - 962	100	60 / 60	plus	ABC13768 ABC31161 ABC41631 ABC42806
MLOC	AK359992	1099	7e-23	948 - 1007	98	59 / 60	plus	ABC13768 ABC41631 ABC42806
JLOC1	JLOC1_5854.2	1077	8e-25	831 - 890	100	60 / 60	plus
JLOC1	JLOC1_5854.1	1070	8e-25	824 - 883	100	60 / 60	plus
Harvest21	ABC13768	1056	3e-25	813 - 872	100	60 / 60	plus	ABC13768
Harvest35	U35_6343	1056	3e-25	813 - 872	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_6343 1056 Hv_44K_v2
CTCGCAGGAACCCTAGAGCTTCGCTCCTCCCTTACGGCCGCCACCACTCTCGAACCCACC
CAACACGAACTCCTCTCCCTCGCCGTCGCCCACACCGCCGCCACACTACGCCGCCCGGTT
TCCGTGAGCTCCAGCCGGACGCAGCACACCGGCGAGCTTCTCTTCGTTCTCTGCAGGTTG
TCATGGGCGTGCCAGCAACGACGGCAGGAGGGGCACACCTCCGTGGGACGGGACGCCGCC
ATGGATATGTAGTCCCTTTTCCCCCCACCATGCAGCGGCCCCATGGAGCCTCCTAGCACC
CCAAACCCTAGCGGAGAGAGAGGAAGGGCAAGGAGATGGGCGGTCAAAGCAGGACCCGGT
CACCCACCCGTCTCGCAGACGGACCCAAGCAAGCAGGGAGCGACTGGAGCAAGCCCGGCC
GTCTCGTCGACGCGGACCGGAGCTGGCCGGCGAAGGGTGACAGTACGGGGCCGCCCTGAA
GAATAAGATGTTCTCTGCATGTCGCCTGCCTGCGCATCGCCACCCCCGTCGACTAGCTCC
ACCGCATCGCCGCGTGCGCCCCGCAACCTTTGCCCCTGCCGGCGCTCCCTCCGGCAGCGA
GGAGCTCGACCTCTTCATGGAACTGGACATTGTGATTGTGAAGGCAACCAACCATAGCGA
GCATCCATCGAGGGAGAAGTACATAAGAGGAGAAGGCTTCATACTTTACCAATGCTGAGA
AGCTCAAGGTCGGGTACATGACGCCTACATCTGAAGTCTTTGGAACTTCACCGTTGCCAC
GAACTGCTAGTGTAATTGATTGATGATGGATGGTTGTTGTTGTTGGTAGAAATGATAGAA
AGCCTTTTAGGTAGCTGCTGTTGCTGGTAGAAATGGTAGCTCTAGTCCCATGTAGTGTAG
TTCACGTGCTTGGGCTGCCCTACGTTGTTTCATTTTTATGTTAAATAAGTCTGTCAAATG
TACCTATTGTCGTGTCGTGGCTTATTTGAATTCCCTCTTTGTTTCACTTTGTTGCTGGAA
TAATCATAAGTTTATGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None