barSeed - Barley Seed Development Database

Probe CUST_9310_PI390587928

Source Contig U35_21360

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9310_PI390587928	Hv_44K_v2	AGGTATCCCTCATGAAAATGTTGGATCATCCCAATATAGTAAATCTCATTGAGTTCTTGA	483	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59730.1	1266	2e-24	471 - 530	100	60 / 60	minus	ABC23245
MLOC	MLOC_59730.6	1090	2e-24	468 - 527	100	60 / 60	minus	ABC23245
MLOC	MLOC_59730.2	790	2e-23	471 - 528	100	58 / 58	minus	ABC23245
JLOC1	JLOC1_38885.6	1210	8e-25	661 - 720	100	60 / 60	plus
JLOC1	JLOC1_38885.4	1159	8e-25	610 - 669	100	60 / 60	plus
JLOC1	JLOC1_38885.3	797	1e-23	250 - 307	100	58 / 58	plus
JLOC1	JLOC1_38885.1	773	1e-23	226 - 283	100	58 / 58	plus
JLOC1	JLOC1_38885.5	1209	6e-21	623 - 675	100	53 / 53	plus
Harvest21	ABC15182	548	3e-25	484 - 543	100	60 / 60	plus
Harvest21	ABC23245	1022	4e-24	820 - 877	100	58 / 58	minus	ABC23245
Harvest21	ABC15183	1321	2e-21	985 - 1037	100	53 / 53	plus
Harvest35	U35_21360	548	3e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_24242	1022	4e-24	146 - 203	100	58 / 58	plus
Harvest35	U35_21361	1321	2e-21	985 - 1037	100	53 / 53	plus

Contig Sequence (548 bp)

>U35_21360 548 Hv_44K_v2
AAGGTTAAATACCGAAACATCAAGGACGGGAGGTTATATGCAATAAAGGTGTTGAGCAAA
CCATACATGTTGAAAGTGCGTGTTGTGCGGTCAGAAACGGCCATGACGGATGTTCTTCGG
GAAGTCAGTAAACTAGCACACTACTTCCTTGTATAATATAATACTGATACTACCTGTCGC
TTTGCTGTCTTGTTATGTCATGTGCAAACTTCTCTCGGAATGTACTAGTGAATACTGCAT
CATCTATCTAACATTACTTAACCAAGTTGATCAAGAACCTGAATTTGCCTTGGGATGCTC
CAAAGGATTTAAATACATGGCCATCACCACTATATAACTGGATGGCCAACAACTTTTTTG
TCACAAGGCACAAGTGCATCTATATATACAGTGTACCACATCCTGATTTTTTTACTTGAG
AATCAACTACCTTACTTGTTTTCCAACTTCTCTAATTACCTTCCCTTTTGTTGCATCGGA
TACAGGTATCCCTCATGAAAATGTTGGATCATCCCAATATAGTAAATCTCATTGAGTTCT
TGAGTATG

Homology of Contig U35_21360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None