barSeed - Barley Seed Development Database

Probe CUST_9309_PI390587928

Source Contig U35_21361

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9309_PI390587928	Hv_44K_v2	TAGTAAATCTCATTGAGGTGATTGACGACCCAAACACAGATAAATTCTACATGGTTCTTG	1020	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356147	1573	2e-24	658 - 717	100	60 / 60	plus	ABC23245 ABC39525
MLOC	MLOC_59730.3	1189	2e-24	472 - 531	100	60 / 60	minus	ABC23245
MLOC	MLOC_59730.4	827	2e-24	472 - 531	100	60 / 60	minus	ABC23245
MLOC	MLOC_59730.5	1303	2e-24	472 - 531	100	60 / 60	minus	ABC23245
JLOC1	JLOC1_38885.7	847	8e-25	297 - 356	100	60 / 60	plus
JLOC1	JLOC1_38885.5	1209	8e-25	659 - 718	100	60 / 60	plus
JLOC1	JLOC1_38885.2	822	8e-25	272 - 331	100	60 / 60	plus
Harvest21	ABC15183	1321	3e-25	1021 - 1080	100	60 / 60	plus
Harvest35	U35_21361	1321	3e-25	1021 - 1080	100	60 / 60	plus

Contig Sequence (1321 bp)

>U35_21361 1321 Hv_44K_v2
CAGCGGGCATCCAGATCCGCGCCGCCGGCCGCCATTCAGACCGTCGGGATGGCGGCGGAC
ATGGCCGGCTGCTGCTACAGCTGCTTCGGCTTCCTCAGGAAGCACCACCACCGCCGCCGC
CGCCCGCCGTCCAAGGACCTGCTTTTGCCGAGGTCCAGCGACGACGACGGCAGCGGCTTC
TACCCTGGGGACGACCCGGGCAACAGCAGCAGCTTCCTCGGCGACGACAGCAGGAGCAGG
AGCAGGAGCTTCTGCGAGAGGGAAGAGGAGGACTACCTCCTCCGCGACGACGGCGACGGC
GAGCCCCCCCGCAAGCGGTCCGAGGACATCATACTCTCCCGGGCCCGGAACGGCTTCGCC
TGCAGGGACGGCCTCGTCAGGGACACCAGGAGGCTCTTCCGCTCCGAGGACGAAACAACC
GGCTGTAAGATGATCAACCAGTATGTCCACCTGGGCAAGATTGGTGCTGGGAGCTACGGA
AAAGTGGTTAAATACCGAAACATCAAGGACGGGAGGTTATATGCAATAAAGGTGTTGAGC
AAACCATACATGTTGAAAGTGCGTGTTGTGCGGTCAGAAACGGCCATGACGGATGTTCTT
CGGGAAGTCAGTAAACTAGTACACTACTTCCTTGTATAATATAATACTGATACTACCTGT
CGCTTTGCTGTCTTGTTATGTCATGTGCAAACTTCTCTGGGAATGTACTAGTGAATACTG
CATCATCTATCTAACATTACTTAACCAAGTTGATCAAGAACCTGAATTGTGGTGAATTTG
CGTTGGGATGCTCCAAAGGATTTAAATAGATGGCCATCACCACTATATAACTGGATGGGC
AACAAAATTCACTTCTCTTTTGTCACAAGGCACAAGTGCATCTATATATACAGTGTACCA
CATCCTGATTTTTTACTTGAGAATCAACTACCTTACTTGTTTTCCAACTTCTCTAATTAC
CTTCCCTTTTGTTGCATCGGATACAGGTATCCCTCATGAAAATGTTGGATCATCCCAATA
TAGTAAATCTCATTGAGGTGATTGACGACCCAAACACAGATAAATTCTACATGGTTCTTG
AGTATGTTGAGGGGAAAATGGTGTGCGATAACGGTATAGGTTTAGGAGAAGCTACTTCCA
GGAAGTACTTGCGGGACATTGTCTCTGGTGTTATGTATCTTCACTCTCATAACATTATTC
ATGGTGATATTAAACCGGACAACCTCTTGGTCACAAGTACTGGCAATGTGAAGATAGGGG
ACTTCAGCGTTAGCCAGATATTTGAGGATGACGATGATATGCTTTGGAGGTCTCCAGGTA
C

Homology of Contig U35_21361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50330.1	427	5e-63	protein\|CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g11340.2	367	2e-65
Arabidopsis v10	None