barSeed - Barley Seed Development Database

Probe CUST_9304_PI390587928

Source Contig U35_21366

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9304_PI390587928	Hv_44K_v2	GCGCTATATATAGCGGTGTCCTGATTGTTTCTGAAACACAAGGCGTATCTTGTCATGGGT	1278	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.620	1.757	1.201	0.701	0.237	0.316
Raw	422.016	708.162	418.057	395.520	46.038	67.536

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_21366	1341	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1341 bp)

>U35_21366 1341 Hv_44K_v2
GGCACCAGGCGGCGTCGGGATGGGCCCCGCCGACGCCGTTCACGGGGAGGGACCCGGAGG
CGAGGAAGCCGGCGTGGCTGCGGCAGCGGGCCGCGCAGGGGGACAAGTACGCCAGGCTCA
GGGAGTCGCTCGGCGAGCTCAAGCTCAACACCGTCTGCGTCGAGGCCCAGTGCCCCAACA
TCGGAGAGTGCTGGAACGGGGGCGGCGGCGCCGGCGGGGAAGGGGACGGCATCGCCACCG
CGACCATCATGCTCCTCGGCGACACCTGCACCCGGGGCTGTCGGTTCTGCGCCGTCAAGA
CCAGCAACAAGCCTGCGCCGCCGGACGCCCTCGAGCCTCTGAAAACAGCCGTCGCTGTTG
CGAGTTGGGGAGTGGACTATGTTGTGCTGACAAGCGTCGACAGGGATGACATCCCTGATG
GTGGAAGCGGCCATTTCGCCGAAACAGTAAGGGCTCTCAAGGAGTTGAAGCCTACAATAC
TGGTGGAGTGTCTGACCTCAGATTTTCGAGGCGACCTCGAGGCAGTCGCGTCTTTGGCAA
ACTCTGGCCTAGATGTGTATGCGCACAACATCGAAACTGTGAGGAGTATGCAGAGGATAG
TTAGAGATCCCCGAGCAGGATATGAGCAGAGCTTAGCGGTTCTGAAACAAGCAAAGGCTT
GCAAAGAGGGCATGGTGACCAAGTCCTCGATCATGCTTGGTCTAGGTGAGACAGACGAGG
AGATAAAGCAAACCATGGCTGACTTGAGGGCCATCGACGTTGACATTCTGACCTTGGGAC
AATATTTACAGCCAACAGAAAGACATTTGAGGGTCAGAGAATACGTGACTCCTGAGAAGT
TTGATTTTTGGAAGGAGTATGGGGAATCTTTAGGATTTGTGTATGTTGCTAGTGGACCTC
TGGTCCGGTCCTCGTACCGCGCGGGGGAGATATTTGTCCAAAATTTTGTCCGACAGAAAA
AAGCCCAGCTTGTGTCTGCTGCATCGTAATCTGATCTGATGGTCTCCGGCCGATTCTATC
CCATGTCAGAGTTTTCTACACACAGGAAGAGTTAATTTTGTTTGTGGCCTGCAGAACGGA
GCGCAGTGCAACGTTGACCATTCTTCAAAGTTCCTATGCTCCATTGGCGCTCGTCGGTTT
TACGATTGCTTACATCTTGCATTCAGTCATAACGTAATTTCTCTTGTCACTCTGGCGTGT
TCCGTTTTTACCTGTTCGTATCAGTTGTTTAGACAGATAGCTGTATGCCTGTATGTGATG
CTTGGTCTATGATTTGCAGCGCTATATATAGCGGTGTCCTGATTGTTTCTGAAACACAAG
GCGTATCTTGTCATGGGTGCT

Homology of Contig U35_21366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43576.1	385	0.0	protein\|radical SAM enzyme, putative, expressed
Brachypodium v1_2	Bradi2g20230.1	369	0.0
Arabidopsis v10	AT5G08415.1	394	3e-166	Radical SAM superfamily protein \| chr5:2710983-2713101 REVERSE LENGTH=394