barSeed - Barley Seed Development Database

Probe CUST_9298_PI390587928

Source Contig U35_33342

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9298_PI390587928	Hv_44K_v2	TCTCGACATTCCCTCTACCACTTTCTTATGTCACGTTAAGATTCTATGACATTGTATATA	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354951	1240	2e-24	1025 - 1084	100	60 / 60	plus	ABC07964
MLOC	MLOC_53678.1	1049	2e-24	896 - 955	100	60 / 60	plus	ABC07964
JLOC1	JLOC1_34496.1	975	8e-25	535 - 594	100	60 / 60	plus
Harvest21	ABC07964	1344	3e-25	1008 - 1067	100	60 / 60	plus	ABC07964
Harvest35	U35_33342	741	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_14633	1364	3e-25	1019 - 1078	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_33342 741 Hv_44K_v2
TACTATATACAATGTCATAGAATCTTAACGTGACATAAGAAAGTGGTAGAGGGAATGTCG
AGAATGCAGCCTGCAAAGGCAAGTTCATGCGGTTCTTCATTTCTGGAAAACTTTGTTCAG
GACGCCATTTATGGAGCCACCGATCCCTGCTCCCACGGTTTCAGCAAGATACGCGGCCTC
CTTATAAGATTTCCCCAAATCAAGAGCACCTTTGATGCCGCGATTCACAAATGTCCATGT
GTCGTGAAACTCTGGAGAATTATCTGTTAACATGTACACTTCTGAAGCTGAGTAGATGCC
ACCAAGCACAGTACGTTTTGCATACCAATCAATATCTGATCCATCATCTCCAGCAGCATG
CCAGCGGCCGCTGGGCGCCATCGAGACCTACGTCTTCTCCATGTTCAACGAGAACCAGAA
GGACAACGGCGTGGAGCAGAACTGGGGGCTCTTCTACCCCAACATGCAGCACGTCTACCC
TATCAGCTTCTGATGAGGTAGCAGCTACCTAGTGCCCGTATGTCCGTACGTACGCGCGCG
CGTATAAGAGCGTGTACGCCGTACGTATGCGCACATTATGTATTGTACAGGGCTTGGGTT
GGGAACTTGGGATGCGACCGCTGAGGCAGCTCAGATGCGTACGCGAGTAGTAGTGGCTTG
CTATACTAGTGTACCAGTACGTATGATTTTCGATGGAAGGGAAGCATATGCAAACGCTCC
CCCTTCCTCGATGGATCATGC

Homology of Contig U35_33342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None