- Probe CUST_927_PI390587928
- Source Contig U35_6347
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_927_PI390587928 | Hv_44K_v2 | TTTTGTATTCTTCCCAAAGTTATACTCCCTTCATCCTATAAAGCGTCTCAAGATTAGTAC | 374 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 29.136 | 5.683 | 1.599 | 0.349 | 0.040 | 0.031 |
| Raw | 8639.323 | 2658.210 | 653.682 | 220.145 | 8.429 | 7.299 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC13708 | 516 | 3e-25 | 367 - 426 | 100 | 60 / 60 | plus | ABC13708 |
| Harvest21 | ABC13709 | 513 | 2e-21 | 375 - 433 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_6347 | 516 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus |
Contig Sequence (516 bp)
>U35_6347 516 Hv_44K_v2 GCACGAGGCTCAATTCCCATCATCAACGCCGCCGTTAGCCAAGATGAGGACCGCCCTGAT GTGCATGACTGTAATCTTGCTCATGCTATCATCATCATCAGATGCTAGACCCGGAGAATC TTGTTTTGGAAGATATGTTGGGACACATGATCCATGCAATTCCACCAACTGTGACGATTC ATGCCGCATTGAGAACAAGGACGAACCTCTTTGTCAGGGGAGGTGCTCCCAGGTGGCCAA ATGCTATCCAATCGCGTGCATGTGCAAGTTCTGCAGGTTCCCTTGATGCACGTAGATGTA AGATAGAAGGGCACGTTTACATTGCATAACGGCGCATCAAACCCTACTAGCTGGAAGGTT GCTAAGAACTTGAATTTTGTATTCTTCCCAAAGTTATACTCCCTTCATCCTATAAAGCGT CTCAAGATTAGTACAACTTTATATTAAAATTAATATAAAGTTGAGACATTTATTTTAATA ATAAAATATATGAAATTAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_6347 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |