barSeed - Barley Seed Development Database

Probe CUST_9275_PI390587928

Source Contig U35_21370

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9275_PI390587928	Hv_44K_v2	GATCTTGTCTTAATACCATTTTTACAAATGCATGTCTGCGGGCCAGATCTTTGTAAAAAA	676	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37098.2	4076	3e-22	3741 - 3796	100	56 / 56	plus	ABC26292
JLOC1	JLOC1_23980.1	3836	1e-22	3669 - 3724	100	56 / 56	plus
Harvest35	U35_21370	747	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (747 bp)

>U35_21370 747 Hv_44K_v2
AGCGGCAGCTGCAGTGCGGGGCAGTGGCCGAGCTGCTGGAGCCGGGCCTGCTGGAGCTCG
ACCCGGAGTCGTCGGAGTGGGAGGAGTTCCTGCTGGGGATCAAGGTCGGCCTGCTCTGCA
CCGCATCCGACCCGCTGGACCGTCCAGCGATGGGCGACGTGGTGTTCATGCTCGAGGGCT
GCCGCGTCGGCCCGGACATCCCCTCCTCCGCCGACCCGACCACCCAGCCATCCCCGGCGT
AGCCTCCTCCGGCATCCCCTCAGCCGGCATTGTCAGATTCAGTTCAGTAGCTTGTACTCT
AGTACCATTTTTTCCCGTAATTCTTTTCTTAGTTGTTCAGGTTAGCGTTTGGCGCCTCGG
CTGCATGTGCCCGCCAAGCGAAGCAAGTGGGGGGAGAAGTAGCCGTTGGGGGTCGTTTCT
AATCTCGTCTCGTGGTTAGGGGCAGGTCGTCAGATGGCCATGTGGGTGGTGCTTGGCATG
ATGCTCCTGCCATGGCAATGTCGCTGAGCTTAGTGGGCGCGCATGTGGGGTTCACGCCGC
AGCAACGGCTACTGATTCAGGATACGGTCGTGTCTCCTTGCCATCTAGGAGGAGTAGTAT
TTGTTGCCTGCTCTGTACTCTCTGTGTACTCTCTGTTAGGAAATTGATTCGTGTAGGGGC
CTGCTTGGCTTCTTGGGATCTTGTCTTAATACCATTTTTACAAATGCATGTCTGCGGGCC
AGATCTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21370 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None