barSeed - Barley Seed Development Database

Probe CUST_9274_PI390587928

Source Contig U35_21371

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9274_PI390587928	Hv_44K_v2	TTTAGAAGCTCATGCTGTTGATTTATGGCCTGTCGGTAATGTCAAAGAACATAATTCTAC	1410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365722	3010	2e-24	1426 - 1485	100	60 / 60	plus	ABC35034
MLOC	MLOC_10517.1	3505	2e-24	1296 - 1355	100	60 / 60	plus	None
MLOC	MLOC_10517.2	2482	2e-24	1294 - 1353	100	60 / 60	plus	None
JLOC1	JLOC1_6888.2	2315	8e-25	1296 - 1355	100	60 / 60	plus
JLOC1	JLOC1_6888.1	2326	8e-25	1296 - 1355	100	60 / 60	plus
Harvest21	ABC15469	1436	3e-25	1377 - 1436	100	60 / 60	plus
Harvest35	U35_21371	1470	3e-25	1411 - 1470	100	60 / 60	plus

Contig Sequence (1470 bp)

>U35_21371 1470 Hv_44K_v2
ACACAAATCGGACCACCCCCCCACCCCCCCTCTCCGGCGCCCGGCGATGGAGATCCCAAC
TGCCACAATCCATCGCCTCCTATCCTCCATTCGAGAGGGCACCACCGCCGCGCCCCCTGC
CCCTCCCTTCCCCTCCGTCGCCGACGCCGTCGCTGCCTTCGAAGCCGATGCCTCACCGGA
GCTCCTGTGCGGGCGCTGCGGCGCAGCGGGCGGCCTCCTCCGTGGCGCGCAGTCCGCCAT
CTGCGTCTACTGCGGGTCCCCTAGGCGGGGGGAGGGCGATGGTATCGCCTTCCGAGGCAG
TGCGGCCTACCAGTGGTTGCTCGGCTCGCTCCGGCTCGATGGATCTGCTCTCGTAGAATT
TGATGGTGACTCTACAGATTCAAATAAAAGCAAGGAAAAGCCAAAGGGTGGGTTGGTTTT
ATCTGATCTTCTGGACTTAAAACTTACCTGCCCCCCGGAGAATAGGGAAATATCTGGAAG
TTCCACAAGCGGCAAACAACCACCAGTTGCATGCACACTAAATTTTGCTGGTGTTAACCT
GGACTCATTTTCCATTGAAAGGAAAAAGGAGATAGCTGCCACAGCCGTTGCTCTTCCTCT
AAATCATACTATAGTGCAGGAAAAGCATAGCAGTAGTCATGAATCCAGTAGCTCAGAGGT
GCATATTACATCGAAAGGCTTTGATTCCTTCCAGACAAAAACAGGTTCTCAAAGCACAAA
TCAGATGGAAGCTACTACAGCATTTGCAAATTGGGATGCTCACTTTCAGTCTACTGGCTC
AGAAAGTGTTGTTGGAGACTCCAAGCAACTGGACCTATTTAAGAGCGCTTCAGTTGCCGA
GCCTTCTAATTTTCCAGTTTCTGGGACTGCCATGGGACCGGTATTAGCTGCTGGAAATCA
AACAAACATAGATTCAGAAGATTTAGCTTCAGCATTAAATGTAGACAACCTTTTCATTCA
AAAGGCTGTCCCAGCTATTGCGGAGACTAACGTTAGGATCGGTGCTGGAAACAGTGTTGC
TGAGTTCACTGGGTCCTCCCTTGACAAGAATTCAGTTGAGAGCAGTGAATTGTCTGGAAG
GAGTGACATTGGAGTCAGTATTGATGAAGGTTTTGATGACTGGCAAGAATTTGCAGAAGG
TGGAAATCAGGGCATACTACCAAATGTCGGAGAGCATACAGAGATGCCTTCAGAGAGCGA
CTCCTCACAAATAAAAGGAATGGACCCCTTGTCTGTAAGAAGCATGGAATCACCCAACAA
TGTTTCAGGTGATTCTGATGATTGGCAAGATTTTGCACAAAGTTCTGCTCAAGGAGATTC
AGCGAAACTAGTGGAAGGATCATCGTGTGGTCAAGGAGGAGATGGTTCGGGAAATCCAGT
TGCAGAAACATCCATTTCTCTAGAACATTCTTTAGAAGCTCATGCTGTTGATTTATGGCC
TGTCGGTAATGTCAAAGAACATAATTCTAC

Homology of Contig U35_21371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34760.1	971	3e-100	protein\|expressed protein
Brachypodium v1_2	Bradi3g37280.1	869	1e-153
Arabidopsis v10	None