barSeed - Barley Seed Development Database

Probe CUST_9268_PI390587928

Source Contig U35_21379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9268_PI390587928	Hv_44K_v2	GCGTTAGAAAGTCAGCAGAAGAAGCTAATGATCCTAATGTCAATGATACTAAGAAGGAAA	865	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69499.2	1774	2e-24	747 - 806	100	60 / 60	plus	ABC14767
MLOC	MLOC_69499.3	1997	2e-24	690 - 749	100	60 / 60	plus	ABC14767
MLOC	MLOC_69499.1	2226	2e-24	761 - 820	100	60 / 60	plus	ABC14767
JLOC1	JLOC1_46051.2	1868	8e-25	698 - 757	100	60 / 60	plus
JLOC1	JLOC1_46051.1	1949	8e-25	779 - 838	100	60 / 60	plus
Harvest21	ABC14744	899	3e-25	780 - 839	100	60 / 60	plus
Harvest35	U35_21379	985	3e-25	866 - 925	100	60 / 60	plus

Contig Sequence (985 bp)

>U35_21379 985 Hv_44K_v2
CTTTGCTAGGGTTTGCGCGGGCTGATTTCCCGCCGCCTCCGCCCGAAAACGCGAACCACA
GCCGACGCCTCCCGCCGCCGACTCCTGCTCCTCACCGACGACCCACGGCGGCGAGCGCGC
GCGCGCGGCGCCGGGGGAGCCGTCGCAGCAGCCACCGACGGCCGCCGCGGGGGCTGCCTG
GGCCCATTTTTCAGCACACGTACCACCACGATTTCTCGTTGGCCAAGGCTTAAATCTCTT
GAAGCCATCAACAAACTGAAGTCTTCCTGCTTCCACCAATCTCGAATGATGGCAGACGTC
ACAAATGGCAATTCACACTGTGATATTCAGAGAAAATATCAAGTCGTGGTTGCTGCTACC
CGTGAGATGGGCATTGGGAAGGATGGTGCATTGCCATGGAAGCTGCCTAGTGACCTTAAG
TTTTTTAAGGACCTCACAATGGCCACATCAGACCCATCAAAGAAAAATGCTGTTATAATG
GGAAGGAAAACATGGGAAAGCATACCCACTAAGTTTAGACCATTGCCCGGTCGCTTGAAT
GTTATTCTGACTCGTTCAGGCAGTTCTGATTATGCAAAAGCTGAAAATGTTGTTACCTGT
GGAAGCTTGGATTCTTCCTTAGAACTACTAGCATCTGCTCCCTACAGCTCAACAATCGAG
AAAGCTTTTCTAATAGGGGGTGGCCAGGTACTGAGGGAATCGCTGAATGCATCTGCATGT
GAAGCCATCCATCTTACTGACATAGAGTCCACCATTGAGTGTGATACTTTTATTCCTCCT
ATTGATCCATTGATCTTCCACCCGTGGTATTCATCTTCTCCAGTTGTGGAGAACAACATT
AGGCATTCTTTCGCGACCTTTGTTCGCGTTAGAAAGTCAGCAGAAGAAGCTAATGATCCT
AATGTCAATGATACTAAGAAGGAAAAGTTTGAAATTCAGATTTTTTCATTTCTACCAAAA
ATGATCTTCGAAAAGCATGATGAGT

Homology of Contig U35_21379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g26060.1	470	2e-102	protein\|bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
Brachypodium v1_2	Bradi4g07810.1	518	3e-123
Arabidopsis v10	AT2G16370.1	519	1e-88	\| Symbols: THY-1 \| thymidylate synthase 1 \| chr2:7082038-7084333 REVERSE LENGTH=519