barSeed - Barley Seed Development Database

Probe CUST_9267_PI390587928

Source Contig U35_19060

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9267_PI390587928	Hv_44K_v2	TGTTGTTCCAATGCTTTCTCAGGTCTGTCGTCACTAGTTATGCGTATATTAGTCATTAAA	480	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.730	1.897	1.319	0.539	0.131	0.144
Raw	1920.123	1925.613	1246.210	808.422	67.997	83.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_48113.1	905	3e-24	637 - 695	100	59 / 59	plus
Harvest21	ABC10962	546	3e-25	473 - 532	100	60 / 60	plus	ABC10962
Harvest35	U35_19060	554	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_19060 554 Hv_44K_v2
GAGGGCAGAACGTGAGGACAAGGCAGAGAGCCCAGGAGAGGGATAGAGGGCATCTGTTCA
TCCAAGATACGCCGCGGCTGGCATGGCGAGAACCCTCTTTGGTTTTGTCGCCGCCGCCGT
GCTCCTCCTCGCCGTCCTCATGCCGGCCCTCGCCGCCGCGCAGGCCCCCGCACCGGCGCC
CACCAGCGACGCGTCTTCGATCGACCAGGGCGTCGCCTACCTTCTGATGATCGTGGCGCT
GGTGCTCACCTACCTCATCCACCCGTTGGACGCCTCCTCCCGTTAAAAGCTCTTCTGAGC
CTGTCTATGCGCAGAGGGTTCTCATTCTTTTGTTCATCTTTCTCTTGTTCGTTGATCGAT
AAGCTAGTGGATTCTTGAGAGATTCGTTGTGTGAGATTCGATTTGGATTCATTAATTTGT
TGTTCTTGTACTCTAGTGGATTCGCACGCGCGCGTGCATATTTTTGTTTCACCATGTGCA
TGTTGTTCCAATGCTTTCTCAGGTCTGTCGTCACTAGTTATGCGTATATTAGTCATTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_19060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None