barSeed - Barley Seed Development Database

Probe CUST_9258_PI390587928

Source Contig U35_19067

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9258_PI390587928	Hv_44K_v2	CTCTCCAAATGAACACCCAGAAATCGCAGCGAGGAGAAGAAAAACGAAGAATCGAAGAGA	1128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5347.1	2181	2e-24	23 - 82	100	60 / 60	minus	ABC12717
JLOC1	JLOC1_3433.1	1950	8e-25	1714 - 1773	100	60 / 60	plus
Harvest35	U35_19067	1212	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1212 bp)

>U35_19067 1212 Hv_44K_v2
AGTCAACAAGACTCCTTGCTCTTACTTTAAGGAATCTTGGTTTTAAAGCTCTCTCTATCA
GTGGCCAGATGAGTCAGGACAAAAGACTAGGTGCTTTAAACAAGTTCAAAGCAAAGGATT
TCAACATCCTTATTTGCACTGACGTGGCGAGTCGTGGTCTTGACATTCAAGGAGTTGACG
TGGTTATGAATTATGATATTCCAATGAATTCTAAGGATTATGTACATCGGGTTGGTAGGA
CTGCTCGTGCAGGGCAATCGGGATATGCCGTGTCCTTTGTGAATCAGTACGAGGCTGAGT
GGTTTAAGCTGATTGAGCAGCTCCTTGGTAGGCAAATTCCTGACCGGAAGGTAGATATGG
ATGAGATCCTGATACTTCGTGAGCATATATCTGATTCAAAGAGGATCGCACTGACGAAAC
TGAAGGAGGACGGTGGTCACAAGAAGAGGAGGAAGGCAGCGGAGGATGAAGATGATGAAG
AAGAGGAGGCTCCAAGAGGTCACCGACAGAAATCGAGGTCTTTCAAGAAATCATCAAGGC
GATGATAGCACTCGGGGTCCAGATAGGTGGAAGCTCCCGCCTCATGACCAGTAGATTCCG
TATATACCGCTCCGCCTTGCGAAAGGTATTCATCGAAATTTTGCCCGCAGTTGGTCCGAC
GCACCAGCCATGTTAGTTCCTTCGTGTACTAGCTATCCATGCTATCTTTGTTAGAAGGTC
AGCACACTTTGAGCAATAGCTATTTCTCTGTTTGACACAAGGTTTCACGTGTATGCTACT
GCCTTGTACTAAATGGGCTACAATTAATATGGATCGGAGGGAGTACATGAATATTTCACA
TTTACATCGAACTCGTCTCTTATGGATGGACTCTTATGTACCCTGCTGCAAACCTATCTT
CTTGCTCTGTTCGCCCAATGGAGTCTGACTTTGTAGTTGCGGAGTCGTGTCGAATGGAGC
CTAGATGGAGAGATCACCGCTTCTGAGCGCACGTGCGACGTCGCTGGCGATGGTGATGCA
GAAGAAGAGCCAGCTGAGGAGCGCTGCCCGCACCGTCTCCGCCAGCCGTGCCTCCATCCT
CCATGGCACCATCGCATCCGAGAGGCACCACTCTTTCTGCAAGCATCGCTCTCCAAATGA
ACACCCAGAAATCGCAGCGAGGAGAAGAAAAACGAAGAATCGAAGAGAGTGAAGCATGCT
TACCCCTCGTGC

Homology of Contig U35_19067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46610.1	473	8e-79	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g18930.1	448	1e-88
Arabidopsis v10	AT5G60990.1	456	4e-58	DEA(D/H)-box RNA helicase family protein \| chr5:24546601-24549148 REVERSE LENGTH=456