- Probe CUST_9257_PI390587928
- Source Contig U35_45330
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9257_PI390587928 | Hv_44K_v2 | TGGAGGAAACAATGAATGCTCGTCATCAGAAACTAGATGATGCACAAGAAGAGGAGACAG | 137 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.768 | 1.610 | 1.240 | 0.646 | 0.527 | 0.404 |
| Raw | 145.066 | 191.184 | 137.354 | 103.969 | 31.709 | 27.582 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70277.1 | 4224 | 2e-24 | 2487 - 2546 | 100 | 60 / 60 | plus | ABC10954 ABC10955 |
| JLOC1 | JLOC1_46637.1 | 4234 | 8e-25 | 2485 - 2544 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44072 | 198 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45330 | 198 | 3e-25 | 138 - 197 | 100 | 60 / 60 | plus |
Contig Sequence (198 bp)
>U35_45330 198 Hv_44K_v2 GGATGATACACTTGCCACATGGAAAAAACGGAACAGTGTCTCTTGCCTTGGGAGCTCTCG AGATGAAATGACTTCTGATGTTGTTAGATCAAGAAACTCGAGCGCATCGTCTGCTCTGAA TAATACTCACTATGAAGTGGAGGAAACAATGAATGCTCGTCATCAGAAACTAGATGATGC ACAAGAAGAGGAGACAGG
Homology of Contig U35_45330 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |