barSeed - Barley Seed Development Database

Probe CUST_9255_PI390587928

Source Contig U35_19069

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9255_PI390587928	Hv_44K_v2	ATGCACGTTGTATCATTCAGGAATAGAAGGCCATATTGGGCTTTTTGATTTCATATTTGT	1234	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.981	2.176	0.705	0.609	1.238	1.102
Raw	10.174	18.765	4.630	5.100	3.417	3.409

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3384.1	2673	7e-23	2514 - 2573	98	59 / 60	plus	ABC11609
JLOC1	JLOC1_2038.1	3239	4e-23	3117 - 3176	98	59 / 60	plus
Harvest21	ABC11609	1339	3e-25	1210 - 1269	100	60 / 60	plus	ABC11609
Harvest35	U35_19069	1364	3e-25	1235 - 1294	100	60 / 60	plus

Contig Sequence (1364 bp)

>U35_19069 1364 Hv_44K_v2
CTGGTTACTCCACATCTCCTCTCAAGCACTGAAGCGCAGCTCCTCTTTCACACTCTCCCC
CGCCTCACTTCACCGAGGCGCACGGACGAAAAGCTGCTTGCTGGCTGCTGGGAGCGAGCC
ATGGCTCCCCCGCTCCTCCTCGTCCTCTTCCTCCTCCTCCTCCCCGCCATCGCCGCCGGC
CACCAGCACCCCTCCTCCTACGGCTCCTCCGCGCTCTCCGAATGGCGCAACGCCAAGTCC
TCCTACTTCGCCGCCGACCCCGGCGACGCCATCGGTGGCGCGTGCGGGTTCGGGGATCTG
GGGAAGCACGGGTACGGGATGGCGACGGTGGGGCTGAGCACGGCGCTGTTCGAGCGCGGC
GCCGCCTGCGGCGGCTGCTACGAGGTCAAGTGCGTGGAGGACCTCAAGTACTGCCTCCCC
GGCACCTCCATCGTCGTCACGGCCACCAACTTCTGCCCGCCCAACTACGGCTTCCCCGCC
GACGCCGGCGGCGTCTGCAACCCGCCCAACCACCACTTCCTCCTGCCCATCCAGGCGTTC
GAGAAGATTGCGCTCTGGAAGGCCGGCGTCATGCCCATCCAGTACCGCCGCGTCAAGTGC
CTTCGCGAAGGCGGCGTGCGGTTCTCAGTCTCTGGGAAGAGCTTCTTCTTCACAGTCCTA
ATCAGCAATGTCGGTGGCGCTGGTGATGTCAGATCAGTGAAGATCAAAGGAACAGACTCT
GGCTGGCTCGACATGGGCCGCAACTGGGGCCAGATATGGCACATCAACTTAGATCTAACA
GGGCAGCCGGTATCCTTTGAGCTCACCTCGAGTGATGGCACGACGATGACGAATTTTAAC
GTCGTGCCCAAGGATTGGGAGTTTGGCAAAACATACACCGGCAAGCAGTTCCTTCTCTAG
AAAATTATTGATCGCGACTTACAATTTCTCAAAGAAGAAAAATCATCCTATGAGTTGGTT
GTAGTACTGTATATCTTTCTGAGGAACAAGGTTATTATTAGGAAAGGAATATAATCTCTA
CTGTACATTCCTCTGAGGAACGAGCTGATTATTAGGACAAATATCAGTTTAGTGCAGAGC
CTCAGATAGTTGTTCTACATACTACATGCGCTTGTAATTGTCGGATGTACTATTTTCAAA
TCTGATAGTTGCTCCAGAGGCTTGATGTATCATTCTGAAATGTTCTGATAGCTGCCCCAG
TGTATCATTAAGAAACATTCTGATAGCTGCTCACATGCACGTTGTATCATTCAGGAATAG
AAGGCCATATTGGGCTTTTTGATTTCATATTTGTATTGACTACAGTAGATTATTTGTAGC
CCAGACAATGAGCATTCAAGATTTCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_19069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49410.1	258	2e-162	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi5g19340.1	258	7e-170
Arabidopsis v10	AT3G03220.1	266	3e-114	\| Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 \| expansin A13 \| chr3:742655-743975 REVERSE LENGTH=266