barSeed - Barley Seed Development Database

Probe CUST_9248_PI390587928

Source Contig U35_45338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9248_PI390587928	Hv_44K_v2	GGCATTGATTTCCAAGGTTGGGTCTGGACACAACGAGTGGCTTGATTCAATGTACAATTG	166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53826.1	2618	2e-24	1400 - 1459	100	60 / 60	plus	ABC23513
MLOC	MLOC_53826.2	2987	2e-24	1399 - 1458	100	60 / 60	plus	ABC23513
JLOC1	JLOC1_34603.1	2729	8e-25	1397 - 1456	100	60 / 60	plus
Harvest21	ABC44085	595	3e-25	167 - 226	100	60 / 60	plus
Harvest35	U35_45338	595	3e-25	167 - 226	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_45338 595 Hv_44K_v2
ACAAGGTTCTTCCTCAGACCAGGCACCGATTCTGCAGCTTGCACATCTTGAATGAAGCCC
AGTGCAAGCTATCAGATTTATTAACTGCGTTCCCGTCCCTTTATGATGAGCTTGTCAGTT
GCATCAACATGTCTGACACAATTGATGAGTTCGAAGCAAATTGGGAGGCATTGATTTCCA
AGGTTGGGTCTGGACACAACGAGTGGCTTGATTCAATGTACAATTGCCGGCGGCAGTGGG
TCCCGGTATACTTGAGGGATACATTCTTTGGAGACGAGCCATCAAGGCAGGGGTGTATGA
GCAGGAGCTCGTTTTTTGAGTCTCACATCACTGCTAAAACTAATTTGCAGTCGTTCATTC
AGCACTATGAAAAAGCTCTCGACAGTTGTTATGAGAGGGAGGTGAAGGAAGAATTCGAAA
CAAAGTATTCGCTTCCAGACATCAAGACATCATCTCCTATTGAGAAGCAAGGAGCAGACC
TGTACACAAGGACACTGTTTTTGAGGTTCCAACAGGAATTGGTTGGCGCCTCTGTTTGTA
CTCTGGAAGTGGCAGAAGAGGATGGTAAGGCTTGCATGTATAAAGTGACAACTTC

Homology of Contig U35_45338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45300.1	1067	2e-94	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g13310.1	1064	6e-108
Arabidopsis v10	AT4G38180.1	788	1e-53	\| Symbols: FRS5 \| FAR1-related sequence 5 \| chr4:17906702-17909404 REVERSE LENGTH=788