- Probe CUST_9247_PI390587928
- Source Contig U35_45339
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9247_PI390587928 | Hv_44K_v2 | TTCTTGCTTCCAGCCATTGAAGTTGTCTCCAAATTGCCCCCTCATGACCATGATAAAAAA | 129 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.827 | 1.918 | 1.255 | 0.713 | 0.514 | 0.439 |
| Raw | 229.088 | 205.309 | 137.075 | 106.737 | 30.847 | 29.266 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252056.1 | 3334 | 2e-24 | 1725 - 1784 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_73155.2 | 2627 | 2e-24 | 1824 - 1883 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_48687.2 | 3227 | 8e-25 | 1365 - 1424 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48687.1 | 3678 | 8e-25 | 1816 - 1875 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC44088 | 245 | 3e-25 | 130 - 189 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45339 | 245 | 3e-25 | 130 - 189 | 100 | 60 / 60 | plus |
Contig Sequence (245 bp)
>U35_45339 245 Hv_44K_v2 GACGTTAAAAGTGTTAAAGCTGCTGGTTATGAACGGATGACTGCGGTTCAGGAGGCCACT CTTCCTATTATACTTAAAGGGAAGGATGTCCTGGCCAAAGCAAGGACAGGAACTGGAAAA ACTGTAGCATTCTTGCTTCCAGCCATTGAAGTTGTCTCCAAATTGCCCCCTCATGACCAT GATAAAAAAAGACCACCCATTAGTGTTATTGTTGTGTGCCCGACACGTGAGCTTGCTGAT CAGGC
Homology of Contig U35_45339 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |