barSeed - Barley Seed Development Database

Probe CUST_9243_PI390587928

Source Contig U35_21383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9243_PI390587928	Hv_44K_v2	CGCCGCCACCAGAAACAAACAGCACAGAAATTAACGTATACAGCACAAAGAAACAAAAAA	557	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.567	2.031	1.352	0.551	0.219	0.175
Raw	909.367	1791.285	1052.073	586.384	89.691	84.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363081	3049	7e-23	560 - 619	98	59 / 60	plus	ABC06991 ABC06992 ABC16526
MLOC	MLOC_43455.1	778	7e-23	446 - 505	98	59 / 60	plus	ABC16526
JLOC1	JLOC1_28095.1	778	4e-23	446 - 505	98	59 / 60	plus
Harvest21	ABC16526	769	3e-25	539 - 598	100	60 / 60	plus	ABC16526
Harvest35	U35_21383	788	3e-25	558 - 617	100	60 / 60	plus

Contig Sequence (788 bp)

>U35_21383 788 Hv_44K_v2
ATTCATCCCATCCCACCGCAACCGTCTCCCCTCGCTCGCTCGCTCGCTCGTCCATCTCCC
ATATCTCGCCGCAGCGCGCGCATCAGCACAGCAGAGATCCCTCCACCGCCCGGCGAGCGA
AAGCAAAACCTAGCGCCGCCTCGGCTCGCCGTCCCCGCCGTCTTCTTCGCATCCGACTGA
ACGCCGGCGTGGGGTGCCCAGCCTCCACAACCGGCGACGCGACCCTCCCCGCCGCGCGCT
CCCCACCCGCCTGCTCCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCTAA
GCCCCCTTCCTTACAACAGGATCCAAAATCCCGTCCTAGATTTCTTCTACCTCCCCTTCC
AGAACTTCCTCTTTTGGCATCAGTGATCGCCGGAATCTCCCCCTCCCCCCCAGTAGATTT
CGTCGATTCCTTGTTGTAATTTTTGCCTCCATTTTCTTCTTCTTCTTCCTTCGATCGATC
GATCTACAGCCGGTTTCGCCTCATACAGATTCTTTTCTTCTTCGAGATTTGTCCATTCCA
TCGCCGCTAACCTCCGTCGCCGCCACCAGAAACAAACAGCACAGAAATTAACGTATACAG
CACAAAGAAACAAAAAAAATTCCTGACTTTTCCCCCCCTTCCCAGTGGATTAGCTTTCTC
CGGTTTGTGACGAGATGCCTGCGCTCGCTGTGGACGCTGCCGCCCCCGTGGCCCACGCCT
TCGCCGCGTGCGACGCGTCGCCGCGTTTCGCCGCTCCCCTGCTGGGCCCCGCCGCCGTGG
TGGTTGCC

Homology of Contig U35_21383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None