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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9235_PI390587928Hv_44K_v2TCATGTGTTTGGTTCAAAAAATGTCGCCGGACGTGTGCTCAGGATTAACTTTACAGAAAG2148GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9981.6171.1020.7790.4050.494
Raw 65.14479.75548.93951.38110.41613.089



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC1120422083e-252149 - 220810060 / 60plusABC11204
Harvest35U35_1907122083e-252149 - 220810060 / 60plus



Contig Sequence (2208 bp)

>U35_19071 2208 Hv_44K_v2
GCGGGGGATAACTCCGAGCCAAAACCCTCCCCAAACCCTAGCTAGCCCCCACCCGCACCC
ACCCATTGATGACCGCCGCCGCCGTAGATGCACAGGCTCTCCCTCCTCCCCGCCGCCGCG
TCCACCTTCATTGACGCCGCCACGGCGCCCTTCCTGCTCCCCTCCTCCTCCATGCCCTCC
CTCCGCCTCGGCTCCCCCGTGCGGCTCCTCGCCGCGCGCCGGGGCCCGCCGCCGTCGCTG
CGCTGCGCAGGGGGGGCGAGGAAGGGGGCGTTCTGCACCCTCGAGGCGGCCTCCAGGCGC
GGGGGGGACGCCGCCGGGTCAAAGGAGGAGAGGCGGGGCGGGGACGGGCCCCGCGCGGTG
GCCGAGAGGAGGCTGCGGGGCGTCNGCGCCGTGGCCGGCAGCGGGGAGCTCCTCGCCATC
CCCGGGGTCGGCCCGCGCAACCTCAGGAAGCTCGTCGACAACGGCTTCGAGGGCGTCGCG
CATCTCAAGCAGCTCTACAGGGATAAGTTCTTTGGAAAGTCTAGTGAGAAGATGGTTGAG
TTCTTGCAGAGCTCAGTTGGCATCATACATAAGAATCATGCTGAGAGTATAACTTCATTC
ATCAAAGAGAGTGTTGTTGAGGAGTTAGAGGATACCAACTCATCCAAGCCTCCTCAGAAG
AAGAGGCTAACCTTTTGTGTGGAAGGAAATATCAGTGTTGGAAAGAGCACCTTTCTCCAG
AGAATAGCTAATGAGACTATTGAACTACGTGATCTTGTAGAAATAGTACCTGAACCTGTT
GCTAAGTGGCAGGATGTCGGCCCTGACCACTTCAATATACTGGATGCATTCTATGCCGAG
CCCCAAAGATATGCTTACACATTCCAGAACTATGTCTTTGTGACAAGGGTTATGCAAGAA
AGGGAATCTTCAGGTGGCATCAAACCTCTCAGACTAATGGAAAGAAGTGTTTTCAGTGAC
AGGATGGTATTTGTCCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGC
ATCTATGATTCCTGGTTCGATCCAGTGGTGTCATCGCTCCCAGGCCTTATTCCAGATGGA
TTTATTTACTTGAGAGCCAGCCCAGATACTTGCCATAAAAGGATGATGCTCCGAAAAAGA
TCAGAGGAAGGTGGTGTTAGCCTTGACTACTTACAAGGTTTGCATGAGAAACATGAGAGC
TGGCTATTTCCTTCGAAAGGAGGAGGCAGTGGTGTATTATCAGTTAGTCAGCTGCCCACG
CATATGGATGGCTCCTTGCCTCCAGGAATACGGGATCGTGTCTTTTACCTGGAAGGAGAT
CACATGCATTCTAGCATCCAAAAGGTTCCTGCTCTGGTCTTGGATTGTGAACCTGACATT
GATTTCAACAGAGACATACAAGCCAAACGAAAATATGCCCAGCAAGTTGCGGAGTTCTTT
GAATTCGTGAATAGCAAAAAGGAAGCGCCATCCGAGCAGACAAGCACTGAGAAGGACCGC
ATGAATCCCAAGATCATGTTCCCTAACAGAGGTGGTTTGTGGGTCCCTGACGGCGTGCCA
CCTTTCGCAGGCTCTGCAATGAATCTGGATTTCAGAAGGGCCATGTCTTCATATCTCCCA
ACTTGAGACTTCAGCTTCGAAACTACCCGGGCCTGTTTGGTTGAATGCTAAAAAAGTCAT
AATCATGCTAACTTTTTTCGGAAATGAGCCTACTTGCGGCCAAGGGAGAAAAGAAAGAGC
CACAAGTGTGGCATGCTGAGCTATACGATGACCAAGTCTAATGACACACGTGCCATGAGG
CTAAGCAAGTTGTGACAGTCAACCAAACACAAGACCCTCAGCTCACTGACCTTGTAAAAA
TCGCTGATGTTTTTCCGTAGACTTGTTAGTTCGCCTAGTGCCTAGCCGACGATGTAGAGT
AGTAGTGTGTCTGCGCCTCCGTCTTGTAAATTGGCCCTCTCACTGGTAGTTTCATATTCC
GTGGTAGCACGAGCTTCTGTTTGTCTGCACTATGGTGGTGTACCGCATGTTTTGTTGCTG
GCTGCATTCTGTTCGGAGGTTTCAGAACTGTTACACCGTCGTTGGCTTAGCACGTTGTCC
ACTTGCTTCTTGTTGTGATTGTCATCTGGAATGTTACCTACCTGTGCGTCATGTGTTTGG
TTCAAAAAATGTCGCCGGACGTGTGCTCAGGATTAACTTTACAGAAAG



Homology of Contig U35_19071 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g35520.15270.0protein|deoxynucleoside kinase family, putative, expressed
Brachypodium v1_2Bradi2g24390.14850.0
Arabidopsis v10AT1G72040.15800.0P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27112159-27114248 REVERSE LENGTH=580