barSeed - Barley Seed Development Database

Probe CUST_921_PI390587928

Source Contig U35_6353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_921_PI390587928	Hv_44K_v2	GTCTTTAGACATGGGTAGGTGAAACATGTGCCCCTAAGAATTATCATCAATCAAAATTAA	773	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.602	1.727	1.025	0.845	0.379	0.428
Raw	1613.740	2626.111	1402.187	1778.098	286.554	350.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_304.1	1403	8e-25	1242 - 1301	100	60 / 60	plus
Harvest21	ABC16423	868	3e-25	774 - 833	100	60 / 60	plus	ABC16423
Harvest35	U35_6353	868	3e-25	774 - 833	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_6353 868 Hv_44K_v2
GCCTCCATTCAGGTTCCATTTGATGCTGCGGTGAAAGAAGTACTGGAGCAGTTAAAGGCT
GTTGCAAAAGGTGATATCAAAACTCCTGATACTGAAAAGCGAAGGTTTGGGAATATCGTT
TTTGCTGCAGTTACAGTACCCCAGGCAGATATATTGAGCCTTCTCCGAAAGTTGGGCGAG
AGTGATGGCGATGTAAACAATTTTCTCAACGGCATAAAAGTGGAGGACAACCTAAACAAG
GCTCATGTTACCCTTGCCCACAAAAGAGCCCATGGTGTAGCTGCAGTTGCTAGCTATGGA
GTCTACCAGAACCAGGAAGTCCCTGTGTCGTTCAACGCCTTCCTCTACGCTGATAAGATG
GCTGCTCTTGAGGCACAACTTGGAGAGGTAAATGGCGAGAAGATCGATTCCAAAAATGAT
TGGCCACATGTTACTCTTTGGACAGCCCCTGGTGTTGCACCAAAGGAAGCAAACAAGCTG
CCGCAGCTGTTTTCATCAGGACAAGCGAAACGTGTACTGATCGACCCTCCCATCACCATC
TCAGGAGTGCTGGACTTCTACTGATTCCTGTCTTGGTTTTAGAATTTGATGGTGTGGACT
TGAGCATAGATAGAATCAGGAGTCATCGGGTTATTGCTAGAGGCCAAACAGCTTTGTAAA
TATGTTGAGTTCCATGCCACGAAATTTTCAAGGGATTATTAAAGGATCTTAGGAGTCATG
GCAACAACTATGTAAATATGTTGAGGTTAGGATTCATGGAGGTCGCGATACCAGTCTTTA
GACATGGGTAGGTGAAACATGTGCCCCTAAGAATTATCATCAATCAAAATTAATAAATAC
TCCTAGATAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09400.1	1163	5e-91	protein\|RNA ligase isoform 1, putative, expressed
Brachypodium v1_2	Bradi1g54807.1	1136	5e-105
Arabidopsis v10	AT1G07910.1	1104	2e-63	\| Symbols: ATRNL, RNL, AtRLG1 \| RNAligase \| chr1:2446712-2454386 FORWARD LENGTH=1104