barSeed - Barley Seed Development Database

Probe CUST_9212_PI390587928

Source Contig U35_6956

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9212_PI390587928	Hv_44K_v2	AGTGCTCTGGAATGGCATTCGTTTGTGCAAAGGCAGTGCTTCTCGCGGCGGTGATGCTTG	119	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51907.1	1287	2e-24	1043 - 1102	100	60 / 60	minus	None
JLOC1	JLOC1_33191.1	1283	8e-25	1121 - 1180	100	60 / 60	minus
Harvest21	ABC18573	563	3e-25	103 - 162	100	60 / 60	plus
Harvest35	U35_6956	636	3e-25	120 - 179	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_6956 636 Hv_44K_v2
TACTGGACATCTCAGCATCGACCACACATCCATCGAGTTCTTCCCCGCTCTCTCATCAGT
CTCTGTGGTCGGCTTGATCTAGACACACTCTGTTCTTCGACCACAGCCACAGCCCACAAA
GTGCTCTGGAATGGCATTCGTTTGTGCAAAGGCAGTGCTTCTCGCGGCGGTGATGCTTGC
GACCGCGGCACAGGTTTGCATGGGCGCGAGGCGGCGCATGGAGCTGTACCGGCCGGACCC
GGCCGACATGCTCTCCTACCACAATGGCGCCGTGCTCCACGGCGACATCGCCGTGTCCGT
CCTCTGGTACGGCAACTTTAAGCCGGCGCAGAAGGCGGTGATCCTCGACTTCCTCCTCTC
GCTCACCGCCGAGCCTCAGGCCGCCTCGCCGTCCGTCGCGCAGTGGTGGGGCACCATCGA
CCAGCAGTACCTCTCCCCCGCGAGCGCCAAGTCCAGCGGCGCGGGCGAGAGCACCCGTGT
CCTGCTCGCGGACCAGCTCTCCGACGGCGCGTGCTCCATGGGCAAGTCCCTCACCCTCGA
GCAGATCACCGCCCTGGCCGCGACGGCTAAACCCAAGAAAGGCGGCGTCGCGGTGGTGTT
CACGGCGCANGACGTGGCGGTGGAGGGCTTCGGCAT

Homology of Contig U35_6956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52000.1	314	2e-57	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi3g58640.1	322	1e-62
Arabidopsis v10	None