barSeed - Barley Seed Development Database

Probe CUST_9210_PI390587928

Source Contig U35_6958

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9210_PI390587928	Hv_44K_v2	AAGTACTACGAGAAGCAGGAGAGTCTCCTGAAAGATTTCAGCGAGATGGAGAGCATGAAT	306	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52161.1	1485	2e-24	322 - 381	100	60 / 60	plus	ABC25867
JLOC1	JLOC1_33385.2	1355	8e-25	74 - 133	100	60 / 60	plus
JLOC1	JLOC1_33385.1	1622	8e-25	341 - 400	100	60 / 60	plus
Harvest21	ABC45167	302	3e-25	224 - 283	100	60 / 60	plus
Harvest21	ABC15044	559	3e-25	307 - 366	100	60 / 60	plus
Harvest35	U35_45838	302	3e-25	224 - 283	100	60 / 60	plus
Harvest35	U35_6958	559	3e-25	307 - 366	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_6958 559 Hv_44K_v2
CAGAAACACAAGTGTTGAAGGAGACGCCTCCAATCCATCATCTCGTGAGTGAGTTGTGTG
CGGTTGCATCGCATGCATTGCGCTGCACACCGCTAGCAAGACCGCGGATCGTTCTCCCTC
CCTCCCTCAGCGCCGGTCGATCTCGTCCGGTGCTTCGGCCGGGCGCCGGGCATGGGGCAG
CAGGCGGCGGCGGCGCCGTGGCGGCTCAACGTCAGCGACTTCCAGATGCCGGAGCGGCCC
AAGGAGCCGCCGCCCTTCGCCAGCCGCGTCTTCATGCGTGGCCACGGGAAACAAAGAAAA
ATCGCAAAGTACTACGAGAAGCAGGAGAGTCTCCTGAAAGATTTCAGCGAGATGGAGAGC
ATGAATGAGCTCGGCTGCTTGGATCAGAACGGTGCCCCTACCGACGAAGAGCTGCGGCAA
CTGGCCAAGGGTGAAAGGCTGGCGATCAACCTGTCCAATGTAATCAACCTGGTCCTGTTC
GTCGGGAAAGTTGTGGCTTCCTTCGAGACCAGGTCGATGGCGGTGATCGCGTCGACGCTG
GACTCGCTGCTGGACCTCC

Homology of Contig U35_6958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03914.2	382	6e-55	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None