barSeed - Barley Seed Development Database

Probe CUST_9208_PI390587928

Source Contig U35_6960

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9208_PI390587928	Hv_44K_v2	TAAACAAAAGGGTGACAACTCATTAGAACGCAGACATGCCAGAACATGTCCCTCTCTAAA	540	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.140	1.768	1.101	0.886	0.457	0.507
Raw	528.382	1250.079	688.407	871.847	160.362	191.758

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22171.2	646	7e-23	510 - 566	100	57 / 57	plus	ABC17288
MLOC	MLOC_22171.1	879	7e-23	743 - 799	100	57 / 57	plus	ABC17288
JLOC1	JLOC1_15366.2	794	4e-23	658 - 714	100	57 / 57	plus
JLOC1	JLOC1_15366.1	794	4e-23	658 - 714	100	57 / 57	plus
Harvest21	ABC17288	614	3e-25	15 - 74	100	60 / 60	minus	ABC17288
Harvest35	U35_6960	614	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_6960 614 Hv_44K_v2
GATATTGAGCATGTTCGTGATCTGTTGGATGCAAACACTTCTCAGCTGATGGCGTGTTTA
ACAGTTGACCTGGGAGAAGATGATAAAGAGTTACTCCATTCCGAGGCAGAGAAGAAGAGG
AGAGAAAAAATTGGGTCATTGTTTAATCTGCAACAAGAACGGAATGGTTTAATTGAACCA
AAGAAAGACCTTGCCATACAGCCCGGAATGTATGTTTCTCTTCCTGCTATTGAGCCAACT
ACAAGTGCAGGAGACAGCACCAATTCTTGGGAAGCAACCGCAAGCTCAACTTCAGTAACA
GATCCACCCGTCACGGCAAACATCAGCGGCGGCGGCAAGAAGCAAAACAACTCAGGTCCT
CCAAGGAGGAACCGAGCTTATGCTCCCAGAAAACAGCCTCATGGCCAACGTGCTGGGAAA
CAGTGGCAGAGAAGCCAGCCCGCTAGGCAACAGTGGCAGAAGAAAGACGCAGAAACTTGA
CAATAGCATTTTTGCAGCTCTGTTTTATCAAACATGTATATTGACGGAGAGTACGGTTGT
TAAACAAAAGGGTGACAACTCATTAGAACGCAGACATGCCAGAACATGTCCCTCTCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_6960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g35870.3	272	5e-54	protein\|RWD domain containing protein, expressed
Brachypodium v1_2	Bradi4g16230.1	381	4e-73
Arabidopsis v10	None