barSeed - Barley Seed Development Database

Probe CUST_9207_PI390587928

Source Contig U35_6961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9207_PI390587928	Hv_44K_v2	GGGAGTTTTTCTCAGGTTTCCCTTGTTATTTCCTAACTATGTACTACCTGTTTTCTGGTT	767	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15143.1	2560	7e-23	1699 - 1755	100	57 / 57	minus	ABC14502
MLOC	MLOC_15143.2	2194	7e-23	1464 - 1520	100	57 / 57	minus	ABC14502
MLOC	MLOC_15143.6	1446	7e-23	716 - 772	100	57 / 57	minus	ABC14502
JLOC1	JLOC1_10365.1	1048	4e-23	318 - 374	100	57 / 57	minus
Harvest21	ABC14502	834	3e-25	768 - 827	100	60 / 60	plus	ABC14502
Harvest35	U35_6961	834	3e-25	768 - 827	100	60 / 60	plus

Contig Sequence (834 bp)

>U35_6961 834 Hv_44K_v2
CAGCTCCTTTCTCCCTTCCGCTGGCGCGCCTTGCTCTGCACCTCCTCGCCGTCGATCTCT
GTCTACCGGCGGACCTCCTCGCTGTCGCTGCTGCCGAGGCTGTTTGTTGCCCACCCAGTA
GATTGTGAATTGCAATAGACGAAACGCACATTGCCCACAATGGCTCTAACGCTCTTACGA
GGGATCAGAACGCAAACCTTATTTGGAGCAAATGCAGGCCTGTTCTGTACCACTCGACGT
CATCCGCTAGCCCACTTCACAACTAGGGTGGAGAGTGTGCAGACCAGTGAGCCCAAATCA
GTGCGCAAATCAATTCAACAAGCCACCAAGGAGGCAGCGGAGCACAAGACACAAGGTTTT
GAAGCGGTGATCGGCATTGAGACCCATGTCCAGCTCTCGACCATCACAAAGGCGTTTTGC
TCCTGCCCATACGACTATGGATCCCAGCCAAACAGCACTGTTTGCCCCACCTGCATGGGC
CACCCCGGGACATTGCCGGTTCTGAACGCAAAGGTTGTTGAATGTGCTGTCAAGCTAGGC
CTCGCTCTCAACTGTGAGATTTCCATGACATCCAAGTTGATCGAAAGCAGTACTTCTATC
CAGACCTTCCCAAGGGATACCAGATTTCGCAGTTTGACATTCCGATTGCTGAGAAGGGTT
ACCTTGATTTGGATATTCCAATGGAGTTTGGTGGTGGTCACAGGCGATTTGGGGTCACGC
GGGTTCACATGGAAGAAGATGCTGGCAAGCTGCTTCACTCTGAATCAGGGAGTTTTTCTC
AGGTTTCCCTTGTTATTTCCTAACTATGTACTACCTGTTTTCTGGTTATATTCT

Homology of Contig U35_6961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34210.2	545	2e-90	protein\|aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Brachypodium v1_2	Bradi4g16830.1	548	2e-103
Arabidopsis v10	AT1G48520.1	550	2e-62	\| Symbols: GATB \| GLU-ADT subunit B \| chr1:17940185-17942540 FORWARD LENGTH=550