barSeed - Barley Seed Development Database

Probe CUST_9206_PI390587928

Source Contig U35_6962

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9206_PI390587928	Hv_44K_v2	TAACCCACAGCTTCAAGCATTAATCCGGCAGCAGAAACTGGCACATATTCAGCATCTACA	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368861	3365	2e-24	1172 - 1231	100	60 / 60	plus	ABC02607 ABC08350
MLOC	MLOC_59103.3	2093	2e-24	1303 - 1362	100	60 / 60	minus	ABC08350
MLOC	MLOC_59103.1	2964	2e-24	2252 - 2311	100	60 / 60	minus	ABC08350
MLOC	MLOC_59103.2	3270	2e-24	2249 - 2308	100	60 / 60	minus	ABC08350
JLOC1	JLOC1_38439.1	3045	8e-25	729 - 788	100	60 / 60	plus
Harvest21	ABC16265	725	3e-25	639 - 698	100	60 / 60	plus
Harvest35	U35_6962	734	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (734 bp)

>U35_6962 734 Hv_44K_v2
AGACCGACCCAAGCAAAGGAGGGAGCGACTGGAGCAAGCCCGGCCGTCTCGTCGACGCCG
CGGACCGGAGCTCGCCGGCGGAGCTAAAATATCCGAAGATCCTCAGTAGCACCCATCGAG
TGGTGTTCTTTTTCAATAATCAAGATTCTTCAAGGTGATGGTTGAGTTGCAACACTGGTG
ATCTCCATGTCTGTGGCTCCACACTTCAATCTTGGACTTGTTCCCAGGGACATGAATGGT
AGCATTCCAGTTAGTTCTGCAAATTCCTCTGGGCCAAGTATTGGTGTTAGCTCTTTGGTG
ACCGATGGCAACTCATCACTCTCTGGAGGTGCCCAGTTTCAGCATAGCACGAGCATGAAT
GCTGATTCATTCATGCGCCTTCCTTCCTCACCGATGTCATTTTCATCCAATAACATATCT
GGCTCGTCAGTCATTGATGGGTCCACCATGCAGCAAAGTCCACCTCAAGAGCAGATGCAG
AAGCGGAGATCATCTAGTGCAACATCGCAACCTGGGATTGAGGCTGATGGTGCATTTCAT
GGTCAGAAGAAGCCAAGGGTTGATATTAGGCAAGATGATATCCTGCAACAGCACTTGATT
CAGCAGCTGCTCCAAGGCCAGAGTTCTCTTCATTTCCAGGGCCAACATAACCCACAGCTT
CAAGCATTAATCCGGCAGCAGAAACTGGCACATATTCAGCATCTACAGCAGCATCAGTTG
TCGCAACAATTTCC

Homology of Contig U35_6962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g49497.1	815	6e-51
Arabidopsis v10	None