barSeed - Barley Seed Development Database

Probe CUST_9204_PI390587928

Source Contig U35_6964

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9204_PI390587928	Hv_44K_v2	ATCTGCTAAAACAAAAGTAACTATCACTGCCCTAGACCGGGCGAATGCAGAAGATGCCAT	1183	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.631	2.120	1.324	0.661	0.297	0.359
Raw	1499.847	1835.344	1031.506	791.031	124.940	168.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39177.2	898	2e-24	157 - 216	100	60 / 60	minus	None
MLOC	MLOC_39177.1	1422	2e-24	489 - 548	100	60 / 60	minus	None
JLOC1	JLOC1_25527.1	1227	8e-25	624 - 683	100	60 / 60	plus
Harvest21	ABC14963	1253	3e-25	1184 - 1243	100	60 / 60	plus
Harvest35	U35_6964	1255	3e-25	1184 - 1243	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_6964 1255 Hv_44K_v2
CCGCGCCGCCGCATAAACCCTTCTTCTCCCTCCCCACCCCCCGCCGCCACCGCCGCCCAG
CGCGGGTCATGGCGCCCGCCCCCGCGCCGATTCGCGACCTCCTCACCTGCTTCAGCCACT
CCTCCGACTTCCTCGCCCTCTCGTCCGGCGACGGCCGCATCAAGGTATGGGACGCCGTGC
GCGGCCACTTGCAGACCGAGTTCGCCGACCTCCCCGCGGTGGAGGTCGGGGCGCTCCCCG
AGACGAAGCGCGGCCACCTCGCCCTCGACTACACCTGCATGAAGTGGGTGCAGCTCTCCT
TCAAGAGGAAGCGGAAGGCTGGGAGCTTGCTGCTCGTGCTTGGGACGGGCAGTGGGGATG
TCCTTGCGCTCGACGTTGCTGCGGGCCAGTGGAAGTGGAGGATCAGCGATTGTCATCCTG
GGGGTGTGACAGCTGTAGCATACTCGAGGCATGGGCGTAGTGTGTACACAGCAGGCGCCG
ATGGCATGGTCTGTAAGATTGATGCCTCAGATGGATCTGTTGCAGGGAAATTTAGATCTT
CCTCCAAGGCAGTATCCGCCATGGCGGTATCATCAGATGGAACAATTTTAGCAACAGCAG
CTGGTCAGTTGAGGACCTTTGATGCTTCTGACAACAAAAAGATTCAAAAGTTCTCTGGGC
ATCCGGTGGCTGTGAGAAACGTGATTTTTAGTAACACTGGCAAATATGTTCTGTCATCTG
GAGTTGGGGAACGCTATGTTGCCATTTGGAAGTTGGGCAGTGGTAAAACTCAGAGTTCAA
GCTGTATACTCTCTATGGAACACCCAGCAATCTTTGTGGACTGCAGGTGTTTAGATACTA
ATGGTACTGAAGCAGTAATAGGTGTGTTGGCTATCTCTGAGGTTGGTATCTGCTATTTCT
GGTCTGGGAATAGCATGGATGACCTACGCAATAAGAAGCCTACTAAGATTGCCTTGTCCG
AGCCCTCTCTTTCAAGAACTAATCAGGATTTTGCGATATTTGCCGCAAAATTTCAAGGAA
TAAATGGACCTACTACAGCCCATGTCCTTCTGGCATATGGATCCGTGGTGAAACCATCTT
TCGATAAGCTAAAGGTTCGTTATGGTAATGATATTAATTTGGGTGTATCTGAAGATGGAG
TTCTCTTACCTACAGTTCAACCCACCATGCCCCAGATAGGTCAATCTGCTAAAACAAAAG
TAACTATCACTGCCCTAGACCGGGCGAATGCAGAAGATGCCATCCTTCCTCTTCC

Homology of Contig U35_6964 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18840.1	638	0.0	protein\|NUC189 domain containing protein, expressed
Brachypodium v1_2	Bradi1g64927.2	626	0.0
Arabidopsis v10	AT5G11240.1	615	2e-121	transducin family protein / WD-40 repeat family protein \| chr5:3582949-3586782 FORWARD LENGTH=615