barSeed - Barley Seed Development Database

Probe CUST_9201_PI390587928

Source Contig U35_6967

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9201_PI390587928	Hv_44K_v2	TATTTGCCACAGGGTGTTTGTTGGGTGAGCTAATGAAAGATCAAAGATTGTTCGGCTAAA	1159	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372605	2016	7e-23	1960 - 2016	100	57 / 57	plus	ABC18274 ABC22073
JLOC1	JLOC1_6412.1	1630	1e-23	1552 - 1609	100	58 / 58	plus
Harvest35	U35_6967	1233	3e-25	1160 - 1219	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_6967 1233 Hv_44K_v2
GCAGGGGCAAGATCCTCATATCGACCAAACCTCCCAAAGAGTACCTTGAAACCAAGACCA
GCAAGGAGGAGGCCCAAAATGGTAGCACAGAGGAGGAGAGCGTGTGGGGGGATGAGATCC
CCGACAGCAAGGCTCAGGTTTCAGAGAAGGACACCGAGCAGTATGTGGAAGAGGATGAAG
AGATGGAGATGCAGGGACAATTGGGGGTCAATGAGGAGTATAAAAGTCTCATCTCAATCC
CCCTCACCCGAAGAAAGCATGACATGGATCAGGATCTCAAGGTTGATCCCGAGAAAGTGT
CTCGGATGAGCTTGGGGGAGGCGGCATACGAGAAGGCCACAATTACACATGGATCTGAAA
TTATAAAGTTTACACAGAGGAACTTGCTACGGATTTTCCCAAAGACAACGCGCATTACTT
CATCCAATTACAATCCACTGATGGGATGGACATATGGAGCTCAGATGGTTGCAGCAAACA
TGCAGGGTCATGGAAGGAAACTATGGCTGACTCAAGGGATGTTCCGAGCAAATGGCGGTT
GTGGTTATGTGAAAAAGCCTGATTTTCTTATGAAGACGGATAAAATGTTTGACCCTAGAT
CGGAACTACCAGTGAAGACAAGGCTCAAGGTTACTGTCTACATGGGAGACGGATGGCGAT
TCGACTTCCGTAAGACGCATTTCGATAAGTGCTCGCCACCAGACTTCTATGCAAGGGTGG
GTATAGCAGGAGTTGTTGCAGACACAACGATGAAGGAGACCAAGGTGATCAAGGATAACT
GGATACCGACATGGGATCAAGAGTTCGAGTTCCCCTTGGCCGTGCCAGAGCTCGCGCTGC
TCCGCGTAGAGGTGCACGAATCTGACAATCACCAGAAGGACGATTTCGCTGGCCAGACCT
GCCTGCCGGTGTGGGAGCTCCGGTCTGGGATACGATCCGTCAGGCTCTACGCCCGTGATG
GCGAGGTGCTGCGCTCGGTCAAGCTCCTCATGCGGTTCGAGTTCTCATAAAGGATGGAGC
TCGCGGGCGTTTCCCTGTTGATCCTGGCGATGTTGGTGGCGTGTGTAAAAAGATTGAAAT
TTTTTGTTCGTTGGTACCTCTGTCATTGTGTGCGTACTCTTGCTGTATATGATATGATTA
GAACTCAATCTGCGACTATTATTTGCCACAGGGTGTTTGTTGGGTGAGCTAATGAAAGAT
CAAAGATTGTTCGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03610.1	599	1e-170	protein\|phospholipase C, putative, expressed
Brachypodium v1_2	Bradi2g38170.1	603	0.0
Arabidopsis v10	AT3G08510.1	581	2e-131	\| Symbols: ATPLC2, PLC2 \| phospholipase C 2 \| chr3:2582626-2585556 REVERSE LENGTH=581