barSeed - Barley Seed Development Database

Probe CUST_9200_PI390587928

Source Contig U35_6968

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9200_PI390587928	Hv_44K_v2	CCCATGGCACAAGCATTCTTGCTGTACATAAAATACAGGGAGAAAGAGAAGAAAGTAAAA	498	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.240	2.136	1.107	0.689	0.192	0.270
Raw	571.893	897.374	391.385	389.712	36.943	57.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22428.1	1072	2e-24	59 - 118	100	60 / 60	minus	None
MLOC	MLOC_22428.2	1009	9e-22	1 - 55	100	55 / 55	minus	None
JLOC1	JLOC1_15555.1	1540	8e-25	1228 - 1287	100	60 / 60	plus
Harvest21	ABC21484	554	5e-23	499 - 554	100	56 / 56	plus
Harvest35	U35_6968	592	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_6968 592 Hv_44K_v2
GCGGCAGTGTTGATTCGTCATTTCCTACGGCGACACTATATTTTAAGGGCGGCGCTGCAA
TGACAGTGAAGCCAGAGAACTATCTTCTGCAGCAGGGTACCAATGACAATACTGTATTAT
GGTGCATTGGCTGGCAAAGAAGCCAGGGAATCACTATACTTGGAGATCTTGTTTTGAAGG
ATAAGATATTTGTGTATGACTTGGGAAACATGCGCATGGGCTGGGCGGACTACGACTGTT
CATTGTCGGTTAACGTCACCTCCTCGTCGGGGAAGAACCAGTACGTGAACACGGGGCAGT
TCGACGTGAACGGGTCGCCGCGACACTACATCGGCCTGGTGCCTACTGGGGTCGCGGTCG
CTCTTGTGCATATGCTCATTTTTGGCATCTTGCTTAGTAGATAGCACACTGGCTGACTGA
CCTGACAGTGTGATTCCACCACACCCATTCTTTACTTAGCGAACGGGGTTGATGCCGATG
TCGCTGCGCCCCTTCCTTCCCATGGCACAAGCATTCTTGCTGTACATAAAATACAGGGAG
AAAGAGAAGAAAGTAAAAAAAGGGTTTATTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56930.1	505	4e-60	protein\|eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi2g51630.1	507	2e-73
Arabidopsis v10	None