barSeed - Barley Seed Development Database

Probe CUST_91_PI415269222

Source Contig TA34320_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_91_PI415269222	Hv_44K_v2	AGCTCTTGTAGTTTATGGATGTTCATTGTATTGGGTGGATTAACTTCTTTACCCTTGTTT	1193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12072.1	941	2e-24	2 - 61	100	60 / 60	minus	ABC16267
JLOC1	JLOC1_8070.1	1026	8e-25	827 - 886	100	60 / 60	plus
Harvest21	ABC16267	1284	5e-23	1194 - 1252	98	59 / 60	plus	ABC16267
Harvest35	U35_7640	1284	5e-23	1194 - 1252	98	59 / 60	plus

Contig Sequence (1279 bp)

>TA34320_4513 1279 Hv_44K_v2
GCTTCAGTCTGCGGAGCCTTTTCTATTGAAGCTAGCCCTGCTGTTGCAATATACACATGG
CTCGCATGCTGGTTCCTGTCTGTATTCACATTGATGCCAGCTGAAATTCCAGAGAATAAC
AACTTAGTAATTTTTAGCGGGGCACTTATAATATTGATCGCAATGGCTTCGAGATGGGCG
ACCATCAATACCAGCACCTTTTGGTTGTATCTTAATCGAGCAAACAAACAAGCCCCTAAA
TCCTCCAAGCTATTTTTTGTTCAGGTTATTTTGATCTCAGTGTCTTCAATTATGGTGTGG
TTAACTACATCTCATCGGTCTCAGCACAAAGAACTGCACCCATTGCACCAGTTGATCAAC
TGGTGCGTAGCTGGTTTTGCGATGGTGCTACCGCTCTTTTCACCTTGTAGCGTTCTATCC
CGTCTTACATCTATCTTCTTGGGTTTTGCCCCTTCGTTTCTGCTGCTTTCTATTGGCTAT
GAAGCGGTTTTCTATAGTGCTTTTGCGCTGGTACTCATGGGATGGATATTTCTTGAATCT
GCCAACTTGTATTGCTCTGAAGGAAGCAATTCTGCGTGCTACAGTAGCCTTGTGGATGGA
TCAGTTTATGGCTATGACGAAAGATGCTTACAACTATCTGATTTACGAATCCCTCTGTTA
TTTATGATCTTATTCAATGTTGCTTTCTTTGGAACTGGTAATTTTGCAAGCATTGCAAGC
TTTGAGATATCATCTGTGTACAGATTCATCACAATATTTAGTCCATTTCTTATGACGGCA
CTTCTGATTTTCAAATTGTTCATTCCATATATGCTTGTCATATGTACATTTAGTGCCATA
ACCAAGATTGTAAGGATTCCACGTATCGGTTGTTATTTTCTTGTAATACTGCTTTCAGAT
GTGATGACAATTCATTTCTTTTTCCTGGTCCAAAACACAGGGAGCTGGATGGAGATTGGC
AACAGCATTAGCCATTTTGGAATTGTAAGTGCGCAAGTAGTCTTCGTGTTGCTGCTTTTT
GCACTCACAAACATATACACAAAAGATATCGAAGTCTCGTCTCGGCAATTGACCTCACGA
AAATTTATGTGAATTGACCTGACTTTTTTTAATATGGATTTTGCAGAATGTATCCATTTT
TGTAGAACTAACTTCTGGCCTTTGTTTTATATGTGGCCCAAGTTTTGGGACTAAGCTCTT
GTAGTTTATGGATGTTCATTGTATTGGGTGGATTAACTTCTTTACCCTTGTTTNCTCGAG
GCAGAAGTGCCTGCTAAAG

Homology of Contig TA34320_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37050.1	914	0.0	protein\|phosphatidylinositolglycan class N family protein, expressed
Brachypodium v1_2	Bradi3g47034.1	979	0.0
Arabidopsis v10	AT3G01380.1	993	1e-147	transferases;sulfuric ester hydrolases;catalytics;transferases \| chr3:144288-149828 REVERSE LENGTH=993