barSeed - Barley Seed Development Database

Probe CUST_9195_PI390587928

Source Contig U35_6973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9195_PI390587928	Hv_44K_v2	TAACATGGAGGTCCTGAAAACTGTTGCTGGAATTAAGCTACCGGATGCTTACGCGGATTT	1195	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366127	3364	3e-21	1299 - 1358	97	58 / 60	plus	ABC13463
MLOC	MLOC_6215.2	2079	3e-21	1799 - 1858	97	58 / 60	minus	ABC13463
MLOC	MLOC_6215.4	2382	3e-21	2101 - 2160	97	58 / 60	minus	ABC13463
MLOC	MLOC_6215.3	2004	3e-21	1722 - 1781	97	58 / 60	minus	ABC13463
MLOC	MLOC_6215.1	2028	3e-21	1747 - 1806	97	58 / 60	minus	ABC13463
JLOC1	JLOC1_4039.1	2017	2e-21	223 - 282	97	58 / 60	plus
Harvest21	ABC21759	1002	3e-25	930 - 989	100	60 / 60	plus
Harvest35	U35_6973	1268	3e-25	1196 - 1255	100	60 / 60	plus

Contig Sequence (1268 bp)

>U35_6973 1268 Hv_44K_v2
AAAAACCCCAAAACCCTACCTCCTCTCCCCGCCGTCTCGCCTCCCCCCCTCCTCCCTCGT
CCCGCCGCCCCCATTTCCCCGCCCACCCCAGAACCCTAGCTAAACCGGCCGCCGTCGCCG
CCATGATCACCGGCGGCCAGAGCTACGTCTCGGCGCCGCCGGCCTTCTCCGCGGACGGCC
GCTTCCTCCTCGTCTGCTCCGGCCGCTCCGTCTCCGTCTTCAGCACCTCCACCGGCATGC
TGGTTTCGGAGCTGGAGGGGCACGAGGGGGACGTCACCGCCGTCGTCGTGGTGCCGCCGC
AGGGCAACGCCGCGGCGACCGCCAAGCTCGCGAGCCACTGCTGGACGGCTGGGCTCGACG
GTTTCCTCATCTACTGGGACTTCGCCACCGCCGAGCTGGTGCGGAAGGTCAAGGTCGATG
CCCCGGTCCACTCCATGGTGATTCCCAACATAAGCAAAACATTGAAAGTGACCGAGGTGT
ACGCTCCTTTCGCATTCGTCTCTGTCGAAGCTTTGAGCAAGGCGGCTATTCAAGAGAAGG
CAAAGGGTAAGCCAGTTAATAAGAAGAAGGAATTGTGGGGGCAGATGAGGATTTATGACT
TGACCAATGGGCGCCAAGTGGGTAGTGAACTGGCTCAGACACAGAAGCCAGAAAAGATTG
TCGCGAGTTGTTGTGGACAATTTTTGGGCATTGCAAATAAGAGACATCTCTATATATGGA
GCATACCTACGAAAGATTTCAATCATGACAATATAAGGAAAATAAAGCTTGGTCACACAA
AAGAGTTGAGCACCCTGGCCTTCCATCCAAGTGAGAGAATCGTTGCTGGTGGTGATGTAA
CAGGGAGGATCTTAATCTGGAGAGGTTTTGGAAAGGCCAAGTTTTCTGGAACACATGGTG
CAAAGTCTCAAGTTGATGAAGAAAGGGATGGTGTAAGGGGTAAAGATGATGCGGGTACTT
GCACTACATGGCACTGGCATTCTAGCGGAGTGAACTTTGTCAAATTCTCTTCTGATGGAG
CTTACTTGCTCTCAGGTGGTATGGAGGGGGTTATTGTTGTATGGCAACTAGATACTGGAA
AGAGAAGGTATAAGCCACGTCTGGGATCTCCTCTTCTCTTCTTTGTAGATTCTCCAGACT
CTTCCATTTCCTGTGTGTCATGTAAAGATAACCAAGTTCATCTTCTAAAAATGCCTAACA
TGGAGGTCCTGAAAACTGTTGCTGGAATTAAGCTACCGGATGCTTACGCGGATTTGAGTC
GACGAGAT

Homology of Contig U35_6973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41620.1	798	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g02100.1	794	0.0
Arabidopsis v10	AT2G18900.1	804	9e-116	Transducin/WD40 repeat-like superfamily protein \| chr2:8188491-8192409 REVERSE LENGTH=804