barSeed - Barley Seed Development Database

Probe CUST_9190_PI390587928

Source Contig U35_6978

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9190_PI390587928	Hv_44K_v2	CATTGTTGCTCAAGACCATTTATAACTCTGTCAAATTTAGACAGGCCTTAGAATGCAAAA	1031	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.308	1.544	2.274	1.986	0.785	0.612
Raw	21.890	174.394	220.376	300.965	43.004	35.532

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53950.3	1833	7e-23	1710 - 1766	100	57 / 57	plus	ABC15434
MLOC	MLOC_53950.1	1950	7e-23	1827 - 1883	100	57 / 57	plus	ABC15434
MLOC	MLOC_53950.2	1948	7e-23	1825 - 1881	100	57 / 57	plus	ABC15434
JLOC1	JLOC1_34700.2	2085	4e-23	1834 - 1890	100	57 / 57	plus
JLOC1	JLOC1_34700.1	2090	4e-23	1839 - 1895	100	57 / 57	plus
Harvest21	ABC15434	1105	3e-25	1032 - 1091	100	60 / 60	plus	ABC15434
Harvest35	U35_6978	1105	3e-25	1032 - 1091	100	60 / 60	plus

Contig Sequence (1105 bp)

>U35_6978 1105 Hv_44K_v2
TCGTTTTGGAGCAAACTCCACCTCCTGTACGATTTCTTCTTCGTTGGGAAGATTGCTGCT
CACACAGTGACCTTCATCTACTACTGCTTTGCGATCCCGTTGTCCGTTTTCTTCCCTGAG
ATTCAGATTCCTCTCTGGGGTGTGGTCTACGTTCCAACTGTTATCACCCTCTGCAAGGCT
CTTGGATCACCAAGTTCATTCCATCTGGTGATTCTCTGGGTCCTCTTTGAGAACGTGATG
TCGTTGCACCGGATAAAAGCGGCGGTAACCGGTCTTCTTGATGCTGGACGAGTTAATGAA
TGGGTTGTCACTGAGAAATTGGGAGATGCCAACAAGACGAAGCCAGCCATGGAAGTATTA
GATGCTGTCAAAGTGATAGATGTTGAGCTAACAACGCCCTTAGTGCCAAAGCTCAAGAAG
AGGAGAATAAGATTATGGGACAAGTACAACTGCTCAGAGATTTTTGTTGGAACCTGCATA
ATAATATGCGGTTTCTACGACGTGCTCTACGCAAACAAGGGATACTACATCTACCTCTTC
ATTCAAGGCCTGGCATTCCTCGTCGTCGGTTTTGAGTATATTGGCACACGCCCTCCCACT
CCCAGTGCCGAATAAGGTGCCATTCATGGAGCTGATATACATGGTTACGGCAAACCGCGT
GCGACTAAAGCCCCTCTCCTGCACATATCGATCTCAGAACATAGCGATATACAGAACCAT
TTTCCTCGGCCCCGGTCAGATCTGATCCAACCATTCTTTGCTGCTGAGAAGGCTATCGAA
ATAGCATGGTAGCTCATCTGATAATAACATGCAGTATTTACTGAAGCATCATGACAGAAA
GATGCTTTCAACACCTGGAAGAATAACAGAAGTTGTAAATGAAATAACATGCTCTGCCAA
TTACTTACTGTAGATTCTCCAAATTTTTATATGCCAATGTACTTACTGATGTAGCTCTGT
TCAGAATAGAGGATGATTAGCAGCACTTCGTCCAGTTGTGTTGTGTGGTAGGACAAACAC
ATGTAAATGTACATTGTTGCTCAAGACCATTTATAACTCTGTCAAATTTAGACAGGCCTT
AGAATGCAAAAAAAAAAAAAAAAGG

Homology of Contig U35_6978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g33740.1	595	2e-116	protein\|CSLA11 - cellulose synthase-like family A, expressed
Brachypodium v1_2	Bradi3g36697.1	558	2e-127
Arabidopsis v10	AT5G16190.1	443	3e-57	\| Symbols: ATCSLA11, CSLA11 \| cellulose synthase like A11 \| chr5:5283663-5286293 REVERSE LENGTH=443