barSeed - Barley Seed Development Database

Probe CUST_9185_PI390587928

Source Contig U35_6984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9185_PI390587928	Hv_44K_v2	TGTTCATGTGTGAGCCCTCTCTGCCATCTATTACACTCATCATACATATGATACGTCTGT	906	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55338.1	5847	2e-24	4583 - 4642	100	60 / 60	minus	ABC05724 ABC14452
MLOC	MLOC_55337.2	6168	2e-24	4888 - 4947	100	60 / 60	minus	ABC05724 ABC14452
JLOC1	JLOC1_35679.5	5418	8e-25	1196 - 1255	100	60 / 60	plus
JLOC1	JLOC1_35679.4	5964	8e-25	1196 - 1255	100	60 / 60	plus
Harvest21	ABC14452	989	3e-25	907 - 966	100	60 / 60	plus	ABC14452
Harvest35	U35_6984	989	3e-25	907 - 966	100	60 / 60	plus

Contig Sequence (989 bp)

>U35_6984 989 Hv_44K_v2
CATCAGTCAAGTTCCTGCCGCTGCGTCGTCGAGCATGAATCAGCAACTGTTCTGGAGCCA
GTGGCAGCTACTGGACTCCATTCTCCCTACAGGAGGTTTTGCACACTCCTACGGCCTGGA
AGCTGCTATGCAATCGCGCATAGTGAACAACCCCGAAGACCTGTGGCTATTCCTCATCCA
GGTCTTGGACAACATTGGAAGTCTGCTGCTTCCATTCGTGTATTGCGCCGGTAGGTCTCC
TGACGCTGCGGCATGGGTCAAGCTAGATCAGCTGCTGGATGCTACGCTGACAAACGAGGT
CGGCAGGAAGGCGTCGACGTCGCAAGGCTCGGCTCTGTTGAGGGTGGCCGCGTCTGTCTT
CACTGAGATCCAGTCGCTGCAGGATCTCCGAAGGACATTTCTCGGTTCCACGAGCGTGTC
GTTTCACCATGCCCCGATATTCGGGTTGATATGTGGGCTGGTTGGATTTGACAGCGAGAC
AACGCAGCGCGCTTACATGTTTGTCGCAATGAGGGATGTGATCTCCGCCGCAACGAGGCT
CAATTTGATCGGACCGCTTGCTGCTTCGGTTCTGCAGCACCAGGTTGCGCCAGATGCCGA
GAAGATGCTGCAAAAGTGGAGGGACCGTGATGTCTCTGAAGCATCACAGACTGCACCACT
GCTTGACGCGTTGCAAGGCTGCCATGCTTACATGTTCTCTAGGCTGTTTTGCTCCTAACA
GCGAGGTTGCTGAATGCAATTTGCTGTAGTTCTGCTCACAGTTGTAACTCAGAGAAGTAC
AGGACCACTGGCTTTCCTAAACAACAATGGCATCAGAAGATTTCAAGCATCCTGAGGATA
GACGCCCAGTATGATTCTTTATTTTACTTGCAAGCAAGATTGTACAAAAATGCCAATAGC
ACATTGTGTTCATGTGTGAGCCCTCTCTGCCATCTATTACACTCATCATACATATGATAC
GTCTGTCTTCAGCTTCACCAATTACAACA

Homology of Contig U35_6984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07150.3	262	7e-137	protein\|urease accessory protein F, putative, expressed
Brachypodium v1_2	Bradi3g05050.2	258	5e-150
Arabidopsis v10	AT1G21840.1	240	7e-106	\| Symbols: UREF \| urease accessory protein F \| chr1:7666859-7667581 FORWARD LENGTH=240