barSeed - Barley Seed Development Database

Probe CUST_9184_PI390587928

Source Contig U35_6985

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9184_PI390587928	Hv_44K_v2	CCATGTCTCGCTGTAAGATACAACCATCTAGTTTGTGCAATGTATAATTTCTTCAGTAAA	818	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355156	2322	9e-22	2184 - 2242	98	58 / 59	plus	ABC17381
MLOC	MLOC_62339.5	1487	9e-22	1324 - 1382	98	58 / 59	plus	ABC17381
MLOC	MLOC_62339.1	2255	9e-22	2194 - 2252	98	58 / 59	plus	ABC17381
MLOC	MLOC_62339.2	1980	9e-22	1917 - 1975	98	58 / 59	plus	ABC17381
MLOC	MLOC_62339.3	2075	9e-22	1912 - 1970	98	58 / 59	plus	ABC17381
JLOC1	JLOC1_40792.5	2268	5e-22	2177 - 2235	98	58 / 59	plus
JLOC1	JLOC1_40792.4	2410	5e-22	2319 - 2377	98	58 / 59	plus
JLOC1	JLOC1_40792.3	2008	5e-22	1917 - 1975	98	58 / 59	plus
JLOC1	JLOC1_40792.2	2005	5e-22	1914 - 1972	98	58 / 59	plus
JLOC1	JLOC1_40792.1	2407	5e-22	2316 - 2374	98	58 / 59	plus
Harvest35	U35_6985	887	3e-25	819 - 878	100	60 / 60	plus

Contig Sequence (887 bp)

>U35_6985 887 Hv_44K_v2
AGAATACATAAAATTAGTAACTGATATTAGCCCTCTTATATGATGCTAAGATGTATTCAT
TTTTCAGAACATTTTCTGGAATGCTTATATCTACGTTGTGTTACCTTAGCATCTCAAATA
GCTGAATATATATTTGCTTTAGGGAAAACATTATCGGGAATTGGGTCGCAAGGAAGATGA
GAAGGCCAGCAGGGAGATATTTGAAGCCAGAAACAAGCATATAACGAACACGGTGACTAT
TGACTTGCACGGTCAACATGTCAAGCAAGCCATGAAGCTCCTCAAAGTTCATATGCTGGT
TTGTGTATGCATGCCATCTACCCTCCTTAGAGTAATTACTGGTTGTGGTGTTGAAGGTAC
AGGGAAAGGAAAGATAAAACGATCGGTTATCGAGCTTGTGGAGAAGGAAGGCATCGAGTG
GCACGAAGGAAACTCCGGAACTATAGTACTACGACTAGGCGGGCCAAGAGAATACCGCTT
CCTGGAGCATGACAGCGATTCTGACTAAGTCAAAGCCTCGCCTCGTCTCTTTTTGGTGGA
GTCTGACATAGATTTAACCGCCGTTCTAATCTATGTATCTCTCCTGTATCTATCTGTACT
TACATGTCCTGTATGTAATTATGGATAGGTGACCTAGGTTCTGGTGTAGTACGAGGTAGT
TTCTGACAACAGCTTGGGAATAGCAAAGAGGAGATAGGCGCCGTCTGATGTCACCATCAT
TCTAGGCTGCTAACCTTGTATTGTACTCTTGAAGCTATGTGCCTGTCTAATTGTTTTATG
TAAGGGTGGAAGGAACAGCCGACAGTGTAACTTTACCACCATGTCTCGCTGTAAGATACA
ACCATCTAGTTTGTGCAATGTATAATTTCTTCAGTAAAAAAAAAAAA

Homology of Contig U35_6985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12530.6	310	4e-73	protein\|smr domain containing protein, expressed
Brachypodium v1_2	Bradi2g07430.1	590	6e-70
Arabidopsis v10	None