barSeed - Barley Seed Development Database

Probe CUST_9183_PI390587928

Source Contig U35_6986

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9183_PI390587928	Hv_44K_v2	AAGCAGTTGATGTCAAGCAATCTTTCAGTGGATCTGCAGAAGTTTTCATGATGCAAAAAA	545	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.098	2.034	1.208	0.715	0.265	0.316
Raw	2901.050	4425.747	2290.263	2143.329	277.305	362.324

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9867.1	1766	3e-21	1296 - 1349	100	54 / 54	plus	ABC18553 ABC43933
JLOC1	JLOC1_6409.1	1483	2e-21	1296 - 1349	100	54 / 54	plus
Harvest35	U35_6986	615	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (615 bp)

>U35_6986 615 Hv_44K_v2
ACTTCCACCCCAGTAGAAGAGACCGTGGAGCCAAAGGTGACCAAGAAGGCACCTGCTAGC
GCCTCCAAGTCCAACAAGCGGAAGAAAACCAAGGACCTCTCCGAATCAGAAGAAGAGGAT
GAGGATGAGAGCGAAGATGATGAGGACGATGATGCTAGGGGCGCAAAGGGCAAGCGTGGA
CGCAAACCATCGGGTAGGGGCAGAGGCAGGGGAGCCAAGAAGGCGACCCCAGAGCCGAAG
CCATCTGGAAGGGGCAGAGGCCGGCCGAAGAAAACCGAGAGCCCGGCTGAAAGCTCGGGG
CGAGGTGGGAAGAGAGGCCGAGGCAGAGCCCGGAAGTGAGGGTCCTAACATAATAGACCT
CGGGGAGCCTTTTTGCTGAAATCAGGTCTAAGCGGATATCTAACACCTGATGTGATCCAG
CCCAATAGCCATTCGAGAATCTTTTCTGTGTGCGGTAGTAACCTTGTGATTGCGAGTCTG
GAATGTTAACATGCGCAACCGTATTATTCATTGGTGATTGTGAGGGGAATTTTCTGCTCG
GTCCCAAGCAGTTGATGTCAAGCAATCTTTCAGTGGATCTGCAGAAGTTTTCATGATGCA
AAAAAAAAAAAAAAA

Homology of Contig U35_6986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None