barSeed - Barley Seed Development Database

Probe CUST_9181_PI390587928

Source Contig U35_6988

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9181_PI390587928	Hv_44K_v2	ATCTGCCTGCATGAACGGAATGAATATATTGTGCATCCACCTGCTTCGTCTATCAAAAAA	950	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.658	2.004	1.279	0.690	0.275	0.482
Raw	194.160	220.753	126.697	107.879	15.087	29.130

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17643	996	3e-25	926 - 985	100	60 / 60	plus	ABC17643
Harvest35	U35_6988	1021	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1021 bp)

>U35_6988 1021 Hv_44K_v2
GGGGGTCCAAGCTAGGGTTCCTCCGTTCCTTCTTCAGTCAGCCGCCGCCAAGTTCTCATC
TGGATCTCTTGCTTGGCTAACTAATCTCCGATTCTCATCCTCGTTGTTCCTTTTTTTTTC
CTTCCAAAAGAAATCCGCTTTCTTCGACCTGCTGTGATTCTTCCGATTTCTTGCCTCGAT
CTTGATTTGTTTTCTTGTTTTGTGGGTGAGAATTTGATGGTTGGGACATGGGAGGGATGG
CGTGATGATCTTCTTTGAAGAGTTGCAGAAGCATTCATGTGCATTACATCTCAATTCCAC
ACGAGATTTCTGACCTTTCCTCCTCCTCGAATCAACAGATCTGGAATGGTGGTTTTGCTT
TTTCTTTCATCAGTCGGCAATGAGGAACTAAACCTGTGCCGGAGGCGGATGCGCCCGTGT
CGGTAACACAACCCTCTAAGAAGTTCTGAGCCACCCCGAGCTCGATCCGATTCTTGATGT
TTTCTGTGTTGATTGGTTTTGATTTGACGATGGATTGGGTGTCATTTGACGCGAGGTGAT
GATGTTTATGTATGATAGTCTGTCAATCCCCTGATGTCACAAGGTGAAGACACGCATACA
TCCCGACAGGCTCTGATCGCTCCTGTTTTCTTCTCTGTTTAGTTCTGGTTTTATGTGTGT
TAGTTTATCAACGGATCGGGATGAATTTGGGTGGGCTCTATATCATGAGTCAACAGCAGG
CGCCGCTCGATGGCGCCCTGTCTGCCGCATGGAGCCTAGATTGACGAGCCAGGAGAAGAT
TGTTTGGAGATCCATCTTCTTTTTATTCCAAGCCACAATATCTGGCCATACTTGTTCAAA
ATCAAATAACCATTGATTTGTCCGGTCTGTCAGTTTAATACACGTTGAGATATTGGTTGT
TTGCTTTGTACCATAGTTTGTAACCATATGAACGGATTACCGCCAAATGTATCTGCCTGC
ATGAACGGAATGAATATATTGTGCATCCACCTGCTTCGTCTATCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_6988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None