barSeed - Barley Seed Development Database

Probe CUST_9179_PI390587928

Source Contig U35_6990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9179_PI390587928	Hv_44K_v2	AGTGAAGCTTAAGATGGAATTTGCTTGTGTTGCTTGATAAATATTGCTGCTTCCGATTCT	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60020.2	1754	2e-24	1240 - 1299	100	60 / 60	plus	ABC18021
MLOC	AK364799	2882	7e-23	2823 - 2882	98	59 / 60	plus	ABC18021
JLOC1	JLOC1_39108.1	1345	8e-25	1240 - 1299	100	60 / 60	plus
Harvest21	ABC18021	670	3e-25	594 - 653	100	60 / 60	plus	ABC18021
Harvest35	U35_6990	670	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_6990 670 Hv_44K_v2
TTGGGTCAGGTTAGCAAACAATCAGTACACTTTGGAGAAAACTAGCCTTTTTGAGTACGA
GACCCATTTTACTGTGATGAATTATAATGGAAGGATGAACCATATGAATACTCCAGAGTT
CGTCAAGGAGTTTGAGAAGGAGCATCAAGTTAAATGGCTGGAGATTCATGAAAGCATACG
TGATATGATAAGGCGTGTCTTTGAGTCAACCTCAGCTGTCCATCCTGAGATGCAGAACTC
ATTCTGCAGGGCCATTTATGGCGTTGATGTTATGCTTGATAATAGATTCAAGCCAAAGAT
TTTGGAGGTGACATATTGTCCGGACTGCACGAGGGCGTGCCAATATGACACACAAGCTCT
CGTTGGAAGCCAGGGCCCCATCAAAGGCAGTGATTTTTTCAACACGGTGTTTGGCTGCCT
CTTTCTCGACGACTTGACGAATGTGTCACCACTGTAATAGTCTTGTCGAAAAGCTGTTGT
AACACCAATGTTCTTGCACCTTGAGATGGATTAGGGATGTTGTACGTTCATGCATCAAGG
AACTGACATCCATGAAAGGATAGGGCACCCGTGAACTCTGAAATGATATTGTGAGTGAAG
CTTAAGATGGAATTTGCTTGTGTTGCTTGATAAATATTGCTGCTTCCGATTCTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_6990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08140.1	871	8e-88	protein\|tubulin--tyrosine ligase-like protein 12, putative, expressed
Brachypodium v1_2	Bradi1g72750.1	873	2e-93
Arabidopsis v10	AT1G77550.1	855	8e-65	tubulin-tyrosine ligases;tubulin-tyrosine ligases \| chr1:29138490-29142965 REVERSE LENGTH=855